| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3052 |
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| Symbol | |
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| ID | 4922791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3624222 |
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| End bp | 3625118 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164662 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001095177 |
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| Protein GI | 127513980 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGACA AAGTGATCCC GTCTCTCTCT GCGGCCATCG CCAAAGAGGT CGAGCGCCGC
ACTCAGGGCG TCGACTGGTG CGAAACCGAG ATTGCAGGGT TGGACTTTTA TCGCCAGTCG
GCGCCCACTA GCTGCTCAGT CTGCGTCGTC GAGCCCAGCA TTGCCCTGGT GGTGCAAGGA
GCCAAAGCGA TGACCCTGGG GGAGCAGACC TTTCGCTACG ATCCGTCACG CTTCTTAATC
ACCTCACTGG ATCTGCCTGC CAAGATGCAG GTGTTAGAGG CCAGCGAAGA GGCGCCCTAT
CTGGGTGTGG TGATCAAGTT GGATCTGGCG GTAATGAGCG ACCTGATGTT GCAGACACCG
CTGACGATGC AGAAAGAAAC CGCATCGGAT CAGGGGATGA TATTAGGCGC CACCACGCCT
AAGTTACTGG GGGCGATCTC GCGCCTGGTT AACCTGCTGG ATGAACCCGA ATCCATTGCC
GTGCTAGCAC CGTTGATTAA ACGCGAGATC TATTGGCGCG TGTTGATGAG CGAACAAGGC
GCCCGCCTAC GCCAGATTGT CTCGGCAGGT AGTCATGGGC TGCGTATTGC CCGCACCATA
GAGTGGCTCA AGGTGCATTA CGACCAGCAT CTGAGCGTCG ACAGCCTGGC GGATATGGCC
AGAATGAGTA AATCCACCTT TCACCACCAT TTTCGCCGGC TCACCTCCAT GAGCCCGCTG
CAATATCAAA AACGCCTCAG GCTGTTAGAG GCGCGCCGCC TCATGCTGGG GGAAGATATC
GACGCCTCGG CCGCCGCCTA TCGCGTAGGC TACGAAAGCC CGTCGCAATT CTCCCGGGAA
TATTCCCGCC TGTTTGGCGC CTCACCCAAG AAGGATGTGG CGACCCAGTG GCAATAA
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| Protein sequence | MQDKVIPSLS AAIAKEVERR TQGVDWCETE IAGLDFYRQS APTSCSVCVV EPSIALVVQG
AKAMTLGEQT FRYDPSRFLI TSLDLPAKMQ VLEASEEAPY LGVVIKLDLA VMSDLMLQTP
LTMQKETASD QGMILGATTP KLLGAISRLV NLLDEPESIA VLAPLIKREI YWRVLMSEQG
ARLRQIVSAG SHGLRIARTI EWLKVHYDQH LSVDSLADMA RMSKSTFHHH FRRLTSMSPL
QYQKRLRLLE ARRLMLGEDI DASAAAYRVG YESPSQFSRE YSRLFGASPK KDVATQWQ
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