| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3051 |
|---|
| Symbol | |
|---|
| ID | 4922790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3623519 |
|---|
| End bp | 3624007 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640164661 |
|---|
| Product | cupin 2 domain-containing protein |
|---|
| Protein accession | YP_001095176 |
|---|
| Protein GI | 127513979 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCCA TCATCTCTGC ATTCGTTATT TCCTCATCCT TACTCGGCCT CAGTGGCCAG
GTGGTGGGGG AGACGCTCCC GCCGCCATCG ATCAGCGTCG CGAGCAATGG CACTCAGCTG
CCCATGCAGG GCCTGGAGCC CTATTTTATC GGTAAGACGC GGGTCGAACC TCTGTTCGGC
GCCAAGGGCG AGGGCCGCAC CTCGGGCGCC ATGGTGACCT TCGAGCCGGG CAGTCGCACC
AATTGGCATA CCCATCCCAT AGGCCAAACC CTCATCGTTA CCAGTGGTCT GGGCTGGGTG
CAACAGTGGG ATGGTAAGCG TATCGAGATA GCCCCGGGCG ATGTGGTGCA GATCCCGGCC
AATGTGAAGC ATTGGCATGG CGCCACCGAC AAGACGGCGA TGAGCCACAT CGCGGTGCAG
GAGGCGAAAG AGGGCAGCGT CGTAAACTGG CTGGAGCCGG TCAGCGCCGC CCAGTATCAG
GGGCATTGA
|
|---|
| Protein sequence | MKSIISAFVI SSSLLGLSGQ VVGETLPPPS ISVASNGTQL PMQGLEPYFI GKTRVEPLFG
AKGEGRTSGA MVTFEPGSRT NWHTHPIGQT LIVTSGLGWV QQWDGKRIEI APGDVVQIPA
NVKHWHGATD KTAMSHIAVQ EAKEGSVVNW LEPVSAAQYQ GH
|
|---|
| |