| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3023 |
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| Symbol | |
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| ID | 4923074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3589718 |
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| End bp | 3590806 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164633 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001095148 |
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| Protein GI | 127513951 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAAAGT ACTGGTACAA AGACTTTGCC CAATATCCAC CGGGCCACAG AGACTATTGG
CGCACCCGTT TGATCGGCCA TACCCTGCTG CTCAGCAGCA GCTTCTTCCT GGTGCTTACC
CTGCTCAACA TCTTCTATTT CGAGAGCTAT GAGTACGCCA CCCTGGACGC CAGCGGCTTC
GTGCTTTCCC TATCGATTCT GGCCTTCTTC AACCGCACCG CCAACGTCAA CCTCGCCTCC
TGGGCGGTGA CCCTGATGGT CACCGGATTG ATCTTGCTGT TCGTTGCCTC TGTGGGCGGC
TATGCCCACT CCCTCTATTG GGCAACCCTG ATCCCGCCGT TCGCCTTCTT CCTCCTCGGA
CGGCAACGAG GCAGCCTGGT CTCTCTAATC GCCTTCGGGG TATGCGCCTA TATCGTCTAT
AACCAGATCC AGGAGGCTAG GCCCGTCACC TTCGGCATGG GCGCCCTGTT CAATGTCATC
GAGGTATCGA TTGCCCATAT CTTGCTGTTT CGCTTCTACG AGGGCACCCG CTCCTCGGCC
TATCGTCAAC TGGGCGAGCG CAACGCCAAG ATCCAGAAAC TGGCGGAAAC CGACAAGCTC
ACCGGTCTCT ACAACAGAGA GAAGCTCGAC ATCACGCTGG AGGAGTATGT GCTGCAGAGC
CGTCACCGAC AGACCCCCTT TAGCCTGCTG ATTCTGGATG TGGATTACTT CAAGCAGATT
AATGACGCCC ACGGCCACCT GACCGGCGAT CGCGTGCTGG TCCAGCTGGC CGACAGCCTC
AGGAGCCTCT GCCGTGAGGG GGATTTTCTG GCCCGCTGGG GCGGTGAAGA GTTCGTGATC
CTGTTGCCCG AGACCCAACT CTCAATCTGT GTTGCCGTGG CCGAACAGCT ACGCCAGGAT
ATCGCCGCAC AGAAGTTTGA TGGCCAGTCT CTCACCATCA GCCTGGGAGC CGCCCAGCTC
AGGGAGGATG ACACAACCAA GACCCTGGTC AACCGCGCCG ATAACGCCCT TTATCAGGCC
AAGCACACGG GCCGCAATCG AGTCGTGGCC GAAGCCGCAA GCCCCCACAT CCGCGCCGTT
AACGACTAA
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| Protein sequence | MLKYWYKDFA QYPPGHRDYW RTRLIGHTLL LSSSFFLVLT LLNIFYFESY EYATLDASGF
VLSLSILAFF NRTANVNLAS WAVTLMVTGL ILLFVASVGG YAHSLYWATL IPPFAFFLLG
RQRGSLVSLI AFGVCAYIVY NQIQEARPVT FGMGALFNVI EVSIAHILLF RFYEGTRSSA
YRQLGERNAK IQKLAETDKL TGLYNREKLD ITLEEYVLQS RHRQTPFSLL ILDVDYFKQI
NDAHGHLTGD RVLVQLADSL RSLCREGDFL ARWGGEEFVI LLPETQLSIC VAVAEQLRQD
IAAQKFDGQS LTISLGAAQL REDDTTKTLV NRADNALYQA KHTGRNRVVA EAASPHIRAV
ND
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