| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3012 |
|---|
| Symbol | |
|---|
| ID | 4923417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3576298 |
|---|
| End bp | 3577191 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640164622 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001095137 |
|---|
| Protein GI | 127513940 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3264] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTGGC AGGATATTAA AGAGATCTTA TCTTTCGTTC TCTTCACCTA TGGGGACTCG
GCGATCACCG TCTCCCAGGT GTTACAGGTG CCGCTGCTCC TGCTACTGGC CTGGTTTATC
GTGACTCGCA TCGGCAAGCT GATCCGCCGC GCCCTGCTGG CCCGTAAGGT GGCCCCGGAT
GCGGTGCATC TCTTCTCCCG CATCTATCTC ATCCTGGCGA TCGCCATCAT TTTGGTGACC
AGCCTGGAGA TCCTCAATAT TCCCATTAAG GCCTTCGCCT TCGTCTCGGG CGCCGTGGCA
ATCGGTGTCG GTTTCGGCGC GCAGAACATC ATCAACAACT TCATCAGCGG CTGGATCTTG
ATGTGGGAGC GGCCGATCCG CATCGGCGAT TTTCTGGAGA TAGGCGAGAC CAAGGGGGTG
GTGGAGAGCA TCAATACCCG TTCGACTCTG ATCCGCCGCA ACGACGGGGT GCATATGCTG
GTGCCCAACA GCCAGCTACT GGAAAATACT GTCACCAACT GGACCCTGAT AGACAACATC
GCCCGCTCGA CCGTGAGGGT AGGGGTTGCC TATGGGTCGG ATGTGGAGCG GGTGGCGGAT
ATCATCAAGC AGACCCTGGA TGAGCATGAG GAGATCTTAA CTACGCCGTC TCCGGTCGCC
ATCTTCGAAG ACTTTGGTGA TAACGCGCTC ATCTTCGATG GTATCTTCTG GGTGTGTGCC
AACACAGAGG CGGACATTCG CCGGATCCGT AGCGATATCC GTTTTCGCAT CTACAAGCTG
TTTACCCAGG CCGGCATAGT GATCGCCTTT CCTCAGCGGG ATCTGCATCT GGATGGCGAG
CTTAAGATAG TCAAGGCCCA GCGAGGCAAC TCTGAGGATA AAGCCGCTGA ATAA
|
|---|
| Protein sequence | MSWQDIKEIL SFVLFTYGDS AITVSQVLQV PLLLLLAWFI VTRIGKLIRR ALLARKVAPD
AVHLFSRIYL ILAIAIILVT SLEILNIPIK AFAFVSGAVA IGVGFGAQNI INNFISGWIL
MWERPIRIGD FLEIGETKGV VESINTRSTL IRRNDGVHML VPNSQLLENT VTNWTLIDNI
ARSTVRVGVA YGSDVERVAD IIKQTLDEHE EILTTPSPVA IFEDFGDNAL IFDGIFWVCA
NTEADIRRIR SDIRFRIYKL FTQAGIVIAF PQRDLHLDGE LKIVKAQRGN SEDKAAE
|
|---|
| |