| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3008 |
|---|
| Symbol | |
|---|
| ID | 4923413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3571739 |
|---|
| End bp | 3572017 |
|---|
| Gene Length | 279 bp |
|---|
| Protein Length | 92 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640164618 |
|---|
| Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
|---|
| Protein accession | YP_001095133 |
|---|
| Protein GI | 127513936 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAGAA CCGCCGCCGC ATTACACATT TTGGTCAAAC ATAAAGAACT CGCCGAAGAG
ATCATCGAGA AGCTCAACAA GGGCGCTAAG TTCGACCAGC TCGCCAAGAA ACACTCCACC
TGCCCATCGG GTAAGAAAGG CGGCAGCCTG GGTGAATTTA AGAAGGGTCA GATGGTGCCC
GCCTTCGACA AGGTCTGCTT CAGCGGCGAG TTGATCACGC CGCATCTGGT CAAGACCAAG
TTCGGCTGGC ATGTGGTGAA GGTGTTGTAT CGGACCTGA
|
|---|
| Protein sequence | MARTAAALHI LVKHKELAEE IIEKLNKGAK FDQLAKKHST CPSGKKGGSL GEFKKGQMVP
AFDKVCFSGE LITPHLVKTK FGWHVVKVLY RT
|
|---|
| |