| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3000 |
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| Symbol | |
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| ID | 4923405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3559832 |
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| End bp | 3561589 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640164610 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001095125 |
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| Protein GI | 127513928 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTCA GATATTTATT ATTATTGTTA ATATTCTTCT TCAGCCAGTC TATGGCTGAA
GAAGTCGATA TTGACGCAAC CTTAACTCAG GCCGATCAAC TTAAGAGCAG CAATCCAAAA
GCCTTCTCTG AGCTGCTAAA TACCCTAGAA AAGGAACCAC TCAATCCACA ACAGAGATAT
TTTTTAGACT ACCTGCGCGG ATATGAGCTG ACCTACCAAG GCAAGCAAGC GCAGAGCATC
GACGTGTTCA ACAAGATCCT TAACTCGAAC GCCAACGAAA CACTAAAATT CCGGGCTAAT
CAAACCTTAA TCAACATCTA TGCAATCTCC CAGGATTGGT CCAAAGGCCT GACGCATCTC
TCCAAAAACT TTCAATTTAT CGAGCAGATA AAGGACCCCG AAACGGTTCA GAGCGGACTG
GCCATCGCCG CCATTTTTTA CAACCAGATT GAGCAGTATG AGTTAGGTCT AAGCTACGCC
GAAAAATTAA GAAGTAGCAA GCCATCTAAA AGAAACACCT GTCTAGCCAA TGGCTTAGCC
ATAGAGGCGC AGCTTGGCCT CAATCAACTC GAGGTCGACT CGCCCAGTTT ACAGGCTGCG
GTCGCCAGCT GTGACGAAGA GGTGATAATG GAGAGCTTTA TCCACTCCTT TATCGCCACT
AAATACCTGC GAGACGGAAA TACGGCAGAG GTCTATGGCC AACTCAAGCC ATCGCTGGAA
ACCATAGAGA AAACCCGTTA CCCAAGGCTT ATCGCCGAGG TCTACGCTAC CCTGGCCAGC
GCCTATCTGC AGGATCACAA GATAGGTGAG GCTCGCTTAT TGGCAGAAAA AATTGTCAAC
CTGGCAAAAG GCTTAGGCAA TACTCAGGCG GTCGTTACCG CCTACAAGGT GCTCTATCAG
ATCGCCGAGC TGAGCGGCAA TTACAAGGCG GCGCTGGATT ATCACGTCAA GTACGCCCAG
GCCGACAAGG CATATCTGGA CGATATCAAG ACCAAGCATC TGGCCTTCCA GCTCGCCGAG
CATCAGGCGG CGGAGCAGAA GAGTCGTATC GCACTGCTGG ACAGACAGAA CAACCTGCTG
CTGACCGAGC AGCAACTGGC GAAGACCCAA GCGGAAAACA ACCGACTGTT TATCTCGCTG
CTAATCGCCA TCATCACCCT GCTGGGCTTC TGGGCCTATA AGTCATGGAC GATTCAGAAG
CGCCTCAAGC AGCTGGCGGA ATACGATGCC CTGACCCATG TGTTTAACCG CGGTCACTTC
ACCCAGGTAG CCCAGAGCGC GCTCACCTAC TGCGAGAGCA GCGAGGTAGA CCTCAGCTAT
ATCCTGTTCG ATCTGGATAA CTTCAAGCAG ATCAACGATA AATATGGTCA CGCCATTGGC
GACTGGGTAC TGAAGAAAGT TGCCAAGGCC TGTCAGGCAC AGGGACGCAA GAACGATATA
TTCGCCCGCA TCGGCGGCGA GGAGTTCTGC ATCGCCCTGC CCGGCTGCGA TCTACAGACG
GCGGTTAAGC TGGCCGAGGC CTGCCGTAAG GCGATTGCCG GGATTGACTG CGGCGCCACC
GGCCATGAGT TTGAGGTTAC CGCCAGCTTT GGGATCACAG ATACTCAGAT GTCGGGCTAT
AAGTTGGAGC GGCTGATCAA CGACGCCGAC AGCGCCATGT ACCAGTCGAA GGAAACCGGG
CGGGATCGCA TCTGTATCTT CGACCCAGAG GCCAAGCGCA CTATCCCTCA GGCGTCCCAT
TCTCTGCTCT CCCTCTAA
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| Protein sequence | MKVRYLLLLL IFFFSQSMAE EVDIDATLTQ ADQLKSSNPK AFSELLNTLE KEPLNPQQRY
FLDYLRGYEL TYQGKQAQSI DVFNKILNSN ANETLKFRAN QTLINIYAIS QDWSKGLTHL
SKNFQFIEQI KDPETVQSGL AIAAIFYNQI EQYELGLSYA EKLRSSKPSK RNTCLANGLA
IEAQLGLNQL EVDSPSLQAA VASCDEEVIM ESFIHSFIAT KYLRDGNTAE VYGQLKPSLE
TIEKTRYPRL IAEVYATLAS AYLQDHKIGE ARLLAEKIVN LAKGLGNTQA VVTAYKVLYQ
IAELSGNYKA ALDYHVKYAQ ADKAYLDDIK TKHLAFQLAE HQAAEQKSRI ALLDRQNNLL
LTEQQLAKTQ AENNRLFISL LIAIITLLGF WAYKSWTIQK RLKQLAEYDA LTHVFNRGHF
TQVAQSALTY CESSEVDLSY ILFDLDNFKQ INDKYGHAIG DWVLKKVAKA CQAQGRKNDI
FARIGGEEFC IALPGCDLQT AVKLAEACRK AIAGIDCGAT GHEFEVTASF GITDTQMSGY
KLERLINDAD SAMYQSKETG RDRICIFDPE AKRTIPQASH SLLSL
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