| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2987 |
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| Symbol | |
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| ID | 4923788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3546326 |
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| End bp | 3547225 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164597 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001095112 |
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| Protein GI | 127513915 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.120469 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGAGC TTAGGCATTT ACGTACATTG GTCGCCCTGA AAGAGAGCGG CAGTCTCGCA
GGCGCAGCCA AGAAGCGCTT TGTCACCCAG TCGGCCTTAT CCCACCAGAT CAAGGAACTG
GAGACCCGCA TCAACTCGGC GATTTTCGTG CGTAAGAGTA AACCCCTCTC CTTTACCCAA
GAGGGCGCTA GGTTGCTCAA TCTGGCCGAA GAGATCTTGC CTAAGGTGAT AGAAACCGAA
ATCGATCTCA AGAATGGCCT GGGCAGCGAA GCGAGAGATC TCTTTGTGGG TATCGAATGC
CACAGCTGTT TTCGTTGGCT GATGCCGGTG ATCGAGCAGT TTAATGCCAG CTTTCCCCAC
ACCAACCTGG AGCTGTCGAG CCGCCACCTG TTCGATTCGC TGACCGCGCT CAAGCAGGGA
CAGCTGGATG TGGTGCTCAC CTCAGACCCT ATACCCGATC ATGATATTGC CTATCAGCAC
CTGTTCGATT TCGAGGTCAA ACTACTGGTC GCCGCGGATC ATCCGCTGGC CGAACTTCCC
TATGTCACGG CGGCGCAGCT TAAGGATCAG ACCCTTCTCA CCTACCCAGT GCCACTAGAC
AGGCTGGATA TCTATCGCCA CTTCATGGAG CCTGCGGGCG TGCCGGTTGC CAAGCAGATC
CGCTGCGATC TCACCGCCAT GTTGCTGCAA CGCATCGCCT GCAAGGATGG GGTCGCCGCC
CTGCCGAGTT GGTCGATCAA CGAGGCCCAC GGCCTGTCGC TCAAGGCGGT AAAACTGGGA
TCAGAAGGGC TCAGACGCCC GCTGTTTGGC GCCTATCGCA GCAACGGCAG CAGTGCGCGC
CTCGCCCAGC AGTGGCTCAA TCTGGTGACC TCTGAGGGGC TGGAGCGTCA GGGGCACTAA
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| Protein sequence | MIELRHLRTL VALKESGSLA GAAKKRFVTQ SALSHQIKEL ETRINSAIFV RKSKPLSFTQ
EGARLLNLAE EILPKVIETE IDLKNGLGSE ARDLFVGIEC HSCFRWLMPV IEQFNASFPH
TNLELSSRHL FDSLTALKQG QLDVVLTSDP IPDHDIAYQH LFDFEVKLLV AADHPLAELP
YVTAAQLKDQ TLLTYPVPLD RLDIYRHFME PAGVPVAKQI RCDLTAMLLQ RIACKDGVAA
LPSWSINEAH GLSLKAVKLG SEGLRRPLFG AYRSNGSSAR LAQQWLNLVT SEGLERQGH
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