Gene Shew_2984 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2984 
Symbol 
ID4923825 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3540273 
End bp3541823 
Gene Length1551 bp 
Protein Length516 aa 
Translation table11 
GC content62% 
IMG OID640164594 
Productferredoxin-dependent glutamate synthase 
Protein accessionYP_001095109 
Protein GI127513912 
COG category[E] Amino acid transport and metabolism
[S] Function unknown 
COG ID[COG0069] Glutamate synthase domain 2
[COG3369] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTAAAC CCGTCATCGC CGATAACAAG CCCAAAAAAG TCGAGCTAAC CAAAGGAAAG 
GAATACTATT TCTGTGTCTG CGGCCGCTCA AACAGCCAGC CCTTCTGCGA TGGTTCCCAC
AAGGGAACGG GATTTAGCCC CAAGGCCTTT ACCGCCGAGC GAAGCGGCGA GGCCTACCTT
TGCGCCTGTA AACACACGGG CAATGCCCCC TACTGCGACG GCACCCACAA ACAGTTTAGC
GCCGAACAGG TGGGCAATGA GGGCCCGGGC CGCGAGGCGA TCGCCAAAGA GGGCAACCAG
GCTCCCAAGG CGGTCGCCAC CAAAGAGGAG CCCGGCGTCG AGTTGATCCA TCAGCTCGCT
AGGGATGGAC TCAAAACACT CGGCCATCAT GGTCCCATGG TCGCCATGGG GGTGCCCAGA
TATCAGCTGC CCAGCTGGGA TGAGATTCAG ATCATGACGG CCCAGATGGC CAACAAGCCC
CTGTTCGAGG AGGAAGCGGT CGACACCGAG CTGATCATAG GCCCGGAGGC GCGAAAGCCC
CTGAGGCTGA AGATCCCCCT GCTGGTGTCA GACATGAGCT TCGGCGCCCT GTCGGAAGAG
GCCAAGGTCG CCCTGGCCAA GGGGGCCGAA CTTGCGGGTA CCGGGATCTG CTCCGGCGAG
GGCGGCATGT TGCCCGAGGA GCAGGCGGCC AACTCACGTT ACTTCTACGA GCTGGCCAGC
GCCCAATTTG GCTATCAGGA AGCCTTGATG GCCAAGATAC AGGCGTTTCA CTTCAAGGGC
GGCCAAGGCG CCAAGACAGG CACAGGCGGC CACCTGCCGG GCAGCAAGAA CCAGGGCAAG
ATAGCCCAGA TCCGCGGTAT TCCAGCGGGC CAAGATGCCA TCTCGCCGCC AAGGTTTAGG
GAGCTCAACT CTGTGGCCGA CTTTAAACGC TTCGCCGATA GGGTACGTGA ACTCAGCGGC
GGCGTGCCTA TCGGCTTTAA GCTCAGCGCC AACCATATCG AGCGGGACAT TCAGTTTGCA
CTCGATGCCA GCGCCGATTA CATCATACTC GACGGCCGTG GCGGCGGTAC CGGCGCCGCG
CCGCAGATCT TTCGCGACCA CATCAGTGTA CCCACCATCC CCGCCCTGGC TCGCGCCCGC
CGCTACCTGG ATCAGCAAGG TGCCAGCGGC CGGGTGACGC TCATCATCAC AGGCGGCCTG
AGGCTCCCCA TGGACTTCGT CAAGGCGATG GCACTGGGCG CCGACGGCGT TGCCCTGGCC
AACAGTGCCA TGCAGGCGAT CGGCTGCGTC GCCGCCCGCA TCTGCAACAC CAACAACTGC
CCCGCCGGTA TCGCCACTCA GAATGCCGAC TTGCGCCAAC GCCTCAACAT CGACAAGTCG
GCGCAGCAAC TGGCCAACTT TCTGGGCGCC TCCACCGAGC TTATGCAGGT GATGGCCAGG
GCCTGTGGCC ATCATCGCCT GCAGGACTTT ACCCTGGACG ATCTCGCCAC CTGGCACAGC
GAGATGGCAA GGCTCTCCGG CATCTCCTAC GCAGGCGTGA CACCGATTTA A
 
Protein sequence
MVKPVIADNK PKKVELTKGK EYYFCVCGRS NSQPFCDGSH KGTGFSPKAF TAERSGEAYL 
CACKHTGNAP YCDGTHKQFS AEQVGNEGPG REAIAKEGNQ APKAVATKEE PGVELIHQLA
RDGLKTLGHH GPMVAMGVPR YQLPSWDEIQ IMTAQMANKP LFEEEAVDTE LIIGPEARKP
LRLKIPLLVS DMSFGALSEE AKVALAKGAE LAGTGICSGE GGMLPEEQAA NSRYFYELAS
AQFGYQEALM AKIQAFHFKG GQGAKTGTGG HLPGSKNQGK IAQIRGIPAG QDAISPPRFR
ELNSVADFKR FADRVRELSG GVPIGFKLSA NHIERDIQFA LDASADYIIL DGRGGGTGAA
PQIFRDHISV PTIPALARAR RYLDQQGASG RVTLIITGGL RLPMDFVKAM ALGADGVALA
NSAMQAIGCV AARICNTNNC PAGIATQNAD LRQRLNIDKS AQQLANFLGA STELMQVMAR
ACGHHRLQDF TLDDLATWHS EMARLSGISY AGVTPI