Gene Shew_2982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2982 
Symbol 
ID4923823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3537658 
End bp3539376 
Gene Length1719 bp 
Protein Length572 aa 
Translation table11 
GC content60% 
IMG OID640164592 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_001095107 
Protein GI127513910 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATTAG CAGCTAAGGG CGAGGCGCAG GCGCCGCAAC AGTTTGAGGT GTGTATCGTC 
GGCAGCGGCG CGGGCGCCGG CCCCATCGCC TATGAGCTGG TCAAGGCGGG GATTGCCGTT
GCCGTGCTCG AGAAGGGCGA CTGGTATACC GAGCAGGATT TCGTCAAAGA TGAGCAGTTG
CCGCGCCATA GGGTGTTTCG CTCTAAGTTC GATGAGGAGC GCCATGTGCT CGAGCTTCCC
GACGGCGAGG GTGGCTGGCG CAGGGAGACC ACGGCGCAGT TTTGGGGCGG CAATATCGTC
GGTGGCGCCT CCAACTTCAT GAGCGGCTAT TTTCATCGCC TCAAGCCGAG TGACTTTCGC
CTAGCCTCCA CGTTTGGGGC TATCCCCGGG GCTAACACTG TGGACTGGCC CATCAGCTAT
GAGGAGCTCG AGCCTTATTA TGCCAAGGTG GAGCAGATTG TCGGCGTCAG CGGCCGGGTG
GTGAAGCATC CACAGTTAGA GCCGAGATCG ACCCTAGATT TTCCCTTTCC GCCAACCGCC
GAGCATCCAA TAGCGGCGCG CTTCGACAAG GCTTGTGAGA CACTTAAGCT GCATCCTCTG
CCCATGGCGA GGGCGATTCT GTCTCGCCCC TTTAAGCAGC GTCTGAGCTG CGAGTATTCT
GGTTACTGCG GCAGCTATGG CTGCCACTCG GGTGCCAAGG GCAGCTCGCG GGCAGCGCTG
CTAAACGATG CCGTGGCCAG CGGAAATTGC CGCATCATCA CCCGGGCAAA GGTGTATCGC
CTCAATACCG ATGCCCAAGG AAGAGTGAGC TCTGCCGACT ATTTCGATGC CAGTGGCCAA
AGCCGGCGCA TTATGGCCAA GGCCTTTGTG GTAGCCTGCT ACGCCATAGA GAGTACCCGC
CTGCTGCTGG CCAGCCCCGG CGAGAAACAT CCCAAGGGGA TAGGCAATCG CTTCGATCAG
CTGGGTAAGA ACCTGCACTG CTGCGCCGGG GGCACGGGCC ATGGGGTGTT TAAGCTCGAT
AGGCTACCGG CGGATGCGGC TAAGGGGCTC AAGCAGCGTG GGCCATTCTT TAATCGCGCC
CTGCAGGACT GGTATGTTAT CGACGACAAG ACGGCGTTCG ATAAGCCGGT GAAGGGGGGC
ACCTTAGATT TCGTGTTTGA TCCGCCATCG CCCACCAGTG AGGCGAACGC GCTCAAGTGG
CAGCAGGGCA ACCTGCTTTG GGGCACACCG CTCAAGCAGA AGCTTAAGGC ACACTTTACC
CAGTCACGGG ACTTTAAGTT CGAGGTCTTC TGTGACTGGC TGACCAATGA CAATTGTTTT
GTCACCCTGG ACGATGAGGA GCGAGACAAA TGGGGCCAGC CAGTGGCCAG GGTGCGCGCC
GGGTTTCATC CCCACGATCT TAAGGTGGCC CAGTATCTGG TCGACCGGGG CGTAGAGGTG
ATGAAGGCGA TGGGCGCCGA TGAGGCCTGG GGCAATGTGT TTAGCGACCC GACGGCCAAT
CTGGTGGCCG GCGGCTGTCG ATTCGGTAAG GACCCAAAGA CCTCAGTGCT GAATCCAGAC
TGCCAAGTCC ACGACTGCGA CAACCTGTAT GTAACCGACG GCGCCTTTAT GCCGAACGGA
GGCAGTGTCA CCCCGACCTT GACCATCTAT GCCAACGCCT TTCGGGTGGC CGACAAGCTG
CTGGCGCGGC TCGCGAGCGC CTCTGAGACT TCAACCTAA
 
Protein sequence
MGLAAKGEAQ APQQFEVCIV GSGAGAGPIA YELVKAGIAV AVLEKGDWYT EQDFVKDEQL 
PRHRVFRSKF DEERHVLELP DGEGGWRRET TAQFWGGNIV GGASNFMSGY FHRLKPSDFR
LASTFGAIPG ANTVDWPISY EELEPYYAKV EQIVGVSGRV VKHPQLEPRS TLDFPFPPTA
EHPIAARFDK ACETLKLHPL PMARAILSRP FKQRLSCEYS GYCGSYGCHS GAKGSSRAAL
LNDAVASGNC RIITRAKVYR LNTDAQGRVS SADYFDASGQ SRRIMAKAFV VACYAIESTR
LLLASPGEKH PKGIGNRFDQ LGKNLHCCAG GTGHGVFKLD RLPADAAKGL KQRGPFFNRA
LQDWYVIDDK TAFDKPVKGG TLDFVFDPPS PTSEANALKW QQGNLLWGTP LKQKLKAHFT
QSRDFKFEVF CDWLTNDNCF VTLDDEERDK WGQPVARVRA GFHPHDLKVA QYLVDRGVEV
MKAMGADEAW GNVFSDPTAN LVAGGCRFGK DPKTSVLNPD CQVHDCDNLY VTDGAFMPNG
GSVTPTLTIY ANAFRVADKL LARLASASET ST