Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2982 |
Symbol | |
ID | 4923823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3537658 |
End bp | 3539376 |
Gene Length | 1719 bp |
Protein Length | 572 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640164592 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_001095107 |
Protein GI | 127513910 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGATTAG CAGCTAAGGG CGAGGCGCAG GCGCCGCAAC AGTTTGAGGT GTGTATCGTC GGCAGCGGCG CGGGCGCCGG CCCCATCGCC TATGAGCTGG TCAAGGCGGG GATTGCCGTT GCCGTGCTCG AGAAGGGCGA CTGGTATACC GAGCAGGATT TCGTCAAAGA TGAGCAGTTG CCGCGCCATA GGGTGTTTCG CTCTAAGTTC GATGAGGAGC GCCATGTGCT CGAGCTTCCC GACGGCGAGG GTGGCTGGCG CAGGGAGACC ACGGCGCAGT TTTGGGGCGG CAATATCGTC GGTGGCGCCT CCAACTTCAT GAGCGGCTAT TTTCATCGCC TCAAGCCGAG TGACTTTCGC CTAGCCTCCA CGTTTGGGGC TATCCCCGGG GCTAACACTG TGGACTGGCC CATCAGCTAT GAGGAGCTCG AGCCTTATTA TGCCAAGGTG GAGCAGATTG TCGGCGTCAG CGGCCGGGTG GTGAAGCATC CACAGTTAGA GCCGAGATCG ACCCTAGATT TTCCCTTTCC GCCAACCGCC GAGCATCCAA TAGCGGCGCG CTTCGACAAG GCTTGTGAGA CACTTAAGCT GCATCCTCTG CCCATGGCGA GGGCGATTCT GTCTCGCCCC TTTAAGCAGC GTCTGAGCTG CGAGTATTCT GGTTACTGCG GCAGCTATGG CTGCCACTCG GGTGCCAAGG GCAGCTCGCG GGCAGCGCTG CTAAACGATG CCGTGGCCAG CGGAAATTGC CGCATCATCA CCCGGGCAAA GGTGTATCGC CTCAATACCG ATGCCCAAGG AAGAGTGAGC TCTGCCGACT ATTTCGATGC CAGTGGCCAA AGCCGGCGCA TTATGGCCAA GGCCTTTGTG GTAGCCTGCT ACGCCATAGA GAGTACCCGC CTGCTGCTGG CCAGCCCCGG CGAGAAACAT CCCAAGGGGA TAGGCAATCG CTTCGATCAG CTGGGTAAGA ACCTGCACTG CTGCGCCGGG GGCACGGGCC ATGGGGTGTT TAAGCTCGAT AGGCTACCGG CGGATGCGGC TAAGGGGCTC AAGCAGCGTG GGCCATTCTT TAATCGCGCC CTGCAGGACT GGTATGTTAT CGACGACAAG ACGGCGTTCG ATAAGCCGGT GAAGGGGGGC ACCTTAGATT TCGTGTTTGA TCCGCCATCG CCCACCAGTG AGGCGAACGC GCTCAAGTGG CAGCAGGGCA ACCTGCTTTG GGGCACACCG CTCAAGCAGA AGCTTAAGGC ACACTTTACC CAGTCACGGG ACTTTAAGTT CGAGGTCTTC TGTGACTGGC TGACCAATGA CAATTGTTTT GTCACCCTGG ACGATGAGGA GCGAGACAAA TGGGGCCAGC CAGTGGCCAG GGTGCGCGCC GGGTTTCATC CCCACGATCT TAAGGTGGCC CAGTATCTGG TCGACCGGGG CGTAGAGGTG ATGAAGGCGA TGGGCGCCGA TGAGGCCTGG GGCAATGTGT TTAGCGACCC GACGGCCAAT CTGGTGGCCG GCGGCTGTCG ATTCGGTAAG GACCCAAAGA CCTCAGTGCT GAATCCAGAC TGCCAAGTCC ACGACTGCGA CAACCTGTAT GTAACCGACG GCGCCTTTAT GCCGAACGGA GGCAGTGTCA CCCCGACCTT GACCATCTAT GCCAACGCCT TTCGGGTGGC CGACAAGCTG CTGGCGCGGC TCGCGAGCGC CTCTGAGACT TCAACCTAA
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Protein sequence | MGLAAKGEAQ APQQFEVCIV GSGAGAGPIA YELVKAGIAV AVLEKGDWYT EQDFVKDEQL PRHRVFRSKF DEERHVLELP DGEGGWRRET TAQFWGGNIV GGASNFMSGY FHRLKPSDFR LASTFGAIPG ANTVDWPISY EELEPYYAKV EQIVGVSGRV VKHPQLEPRS TLDFPFPPTA EHPIAARFDK ACETLKLHPL PMARAILSRP FKQRLSCEYS GYCGSYGCHS GAKGSSRAAL LNDAVASGNC RIITRAKVYR LNTDAQGRVS SADYFDASGQ SRRIMAKAFV VACYAIESTR LLLASPGEKH PKGIGNRFDQ LGKNLHCCAG GTGHGVFKLD RLPADAAKGL KQRGPFFNRA LQDWYVIDDK TAFDKPVKGG TLDFVFDPPS PTSEANALKW QQGNLLWGTP LKQKLKAHFT QSRDFKFEVF CDWLTNDNCF VTLDDEERDK WGQPVARVRA GFHPHDLKVA QYLVDRGVEV MKAMGADEAW GNVFSDPTAN LVAGGCRFGK DPKTSVLNPD CQVHDCDNLY VTDGAFMPNG GSVTPTLTIY ANAFRVADKL LARLASASET ST
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