| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2977 |
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| Symbol | |
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| ID | 4923818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3530664 |
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| End bp | 3532616 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164587 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001095102 |
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| Protein GI | 127513905 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTATGGT TAAATGGTCA CATAGCAAGG TTGGCAAAGC TAAAAATGAC AAGAACAACA
AAAGCAAAAT CCTGGATAAC TTCTCTGCTG CTGATCAGTC TTAGCCTCTC ACTCTTAGGC
CTCAGCCCAT TGAGCCAAGC GCAAGAAGAT AGCGCCGAAG AGATAGACGC CATTTTTAAA
AAGTTCGATC AGGGCGAGTA TAAAGATCAG CAGGCGATCA AAGAGGCGCT CGGCTACCTG
ACAGCAAATA TCACTGCCGA CGACATGGAG CGTTACCTCA AGCTGCAGAC GGTACTTTGC
TGGAACAACT ACGACATCAC CAAACAGCAG GCGCTCAAAG ATGCCATCGC CTTTGCCGAT
CTGAAACTGC TCACCGAAGG GGTCGCCGCC TCGGCGGAGG CCACCACAGA TCTCAAGCTG
TGCCGCGCCT TCATGCACCA ATTACTTGGC AAGGTCGATA TTGCCCTGGA GGAGTACAAC
AAGGTTGTCG CCGAAGCCTA CCTGATAGAA TCGCCACGTC TCATTGCCGA CTCGCGCTCA
CTGCGCGGCG CCATCTACTC TTTTCAGGGT AACTTTGCCC AGGCGCTAGA GGATCTAATC
ACCGCCCAGC ACCTCTATGA GTCCCTCAAC CTGCAACACT GGGCCATCTA CAACCTCACC
GAGTTGGCCA CCAGCTACCG CCGTTTCGGC GATCCTCAGA CGGCAATAAA ATATTATCGC
AAGCTGGAGA AGGGCTTCGA AGATACCGGC GATAAAGATG GCGCCAACGC CATCAAGACG
GAGATAGGCT TCGCCTTGGA GGAACTTGGC GAATATGAGG CGGCGCTAAA AAAGCACAAG
GAAGCCTACC AATACTGGCG TGATACTCTG GGCGAGGAAG CCAGTGCCCA CACGGCGGTG
AATGTCGCCG GCGTGCTGAT TCAGCTGCAT CGTCAAGGGG AGGCCAAGCC CTACCTGGAT
GCGGCGCAGA AAAGCATCAC CCCGGACCAA GGCGCCAGCT ACAGCTTCAT GCGTCTGTAT
CAGGCGCAAT CTGCCCTCAC CAATGGCCAG TATCAACAGG CGCTCGACTA TATCGACATG
GCTGAGGAGA CCTTTAAGCA GATCAAGAAT GCCCGCGGCC TAGAACAGCT GCACATGGTG
CACAGCCAAA TCTTCGTCGC CGAGAAAGAC TGGAAACAGG CCTATGAGGC GCTGCTGAGC
TACATTCAGA CCCATAAGTC GCTGGATGCC ACCCAGCAGA CCAACCGCAC CACAGAGATG
CGCACCCGCT TCAATACCGA GCAGATAGAG CGCGAGAACC AGCAGCTGCT CGAACTGCAG
AAGATCAAAG AGAACGAGCT GGTGATCCTC AAGCAGAACA AGTACCTGCA GCTGGCGGTG
ATCGTCCTGG GCTGCATCAT AATGATCATT CTCTCCATCG TCGCCTACAA ACAGTCGCAG
AAGTCCAAGC TGCTCTCAAT CCTGGCGTTG ACGGACCACC TGACCCAGCT GCCCAATAGG
CGCTATACCT ACTCTAAGGG TGAGGGTTAC TTCAAATCTA AGGATGAGGG CCACCAACCC
CTGTCGATCA TACTGTTCGA TGCCGACCAC TTTAAGAAGG TCAACGATAA GTATGGCCAT
GACATCGGCG ACAAGGTGCT CATCGCCCTG GCCAACATTA GCAACGGACT GATGCGCAAA
CAGGATCTGG TGGGTCGGGT TGGCGGCGAA GAGTTTTTGG TGATCTTACC CGGCACCACG
GCCGAGCAGG CCCTCAATGT GGCTCAGCGC TTGGTGACCA CAGTGGAGAG CAGCAACTTC
GATGACGTCT ACATGAACTT CAAGCTCACC ATCAGTGCTG GTATCGCCTG CACAGATGGC
GACAAGAGCT TCGAGCATCT GCTAAAACGC GCCGACGATG CCCTCTACCG CGCCAAGTCA
TCCGGCCGTA ACTGCGCCAT ATTAGATACC TAA
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| Protein sequence | MLWLNGHIAR LAKLKMTRTT KAKSWITSLL LISLSLSLLG LSPLSQAQED SAEEIDAIFK
KFDQGEYKDQ QAIKEALGYL TANITADDME RYLKLQTVLC WNNYDITKQQ ALKDAIAFAD
LKLLTEGVAA SAEATTDLKL CRAFMHQLLG KVDIALEEYN KVVAEAYLIE SPRLIADSRS
LRGAIYSFQG NFAQALEDLI TAQHLYESLN LQHWAIYNLT ELATSYRRFG DPQTAIKYYR
KLEKGFEDTG DKDGANAIKT EIGFALEELG EYEAALKKHK EAYQYWRDTL GEEASAHTAV
NVAGVLIQLH RQGEAKPYLD AAQKSITPDQ GASYSFMRLY QAQSALTNGQ YQQALDYIDM
AEETFKQIKN ARGLEQLHMV HSQIFVAEKD WKQAYEALLS YIQTHKSLDA TQQTNRTTEM
RTRFNTEQIE RENQQLLELQ KIKENELVIL KQNKYLQLAV IVLGCIIMII LSIVAYKQSQ
KSKLLSILAL TDHLTQLPNR RYTYSKGEGY FKSKDEGHQP LSIILFDADH FKKVNDKYGH
DIGDKVLIAL ANISNGLMRK QDLVGRVGGE EFLVILPGTT AEQALNVAQR LVTTVESSNF
DDVYMNFKLT ISAGIACTDG DKSFEHLLKR ADDALYRAKS SGRNCAILDT
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