| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2975 |
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| Symbol | |
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| ID | 4923816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3529285 |
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| End bp | 3529977 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164585 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001095100 |
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| Protein GI | 127513903 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0220169 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGTCTAG ACAAATTTAT CAGCGAATCC ACCCAGCTCA CCCGCTCTCT GGCCAAGAAG
GCCCTGCACA GGGGCGAAGT GACCGTTGAT GGTCAGGTTA TCAAAGATGG CAGCTTCAAG
CTAAATGAGA GCCAGCAGGT CTGTCTGGAC GGCGAGCCTA TCTCGCTGAT TGGGCCGCGT
TTTATCATGT TGCACAAGCC GGCGGACACC CTCTGCTCCA CCGTCGATGA GGTCTACCCT
TCTGTGCTCA ACCTGCTCGA CCTGCCCCAC AAAGAGGATC TGCATATCGC CGGACGCCTG
GACGCAGATA CCACGGGCCT GGTACTGATC ACCAGTGACG GCCAATGGTC CCACAGGGTC
ACCTCGCCGA AACGCGAATG CGGTAAGACC TATCTGGTGC AGCTTGCCGA TCCCCTCAAG
GCCGAGTGGG TCGAGCAGTT TGCCACCGGG CTGGCGCTGC GCAGCGAAGA GGGACTCACC
AAACCGGCTA CGCTTGAGCT GCTGGGCAGC CACGAGGCGA GACTCACCAT TACCGAAGGT
AAGTATCATC AGGTGAAGCG GATGTTTGCC GCCGTCGGCA ACAAGGTGGT GGGACTACAC
AGGGAATCTG TTGGCGAGAT AGTGCTGGAC GAGAGTCTGG CACCGGGTGA ATGGCGCTAC
CTGACAGAGG CTGAGATAGC CTCGGTAAAG TAG
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| Protein sequence | MRLDKFISES TQLTRSLAKK ALHRGEVTVD GQVIKDGSFK LNESQQVCLD GEPISLIGPR
FIMLHKPADT LCSTVDEVYP SVLNLLDLPH KEDLHIAGRL DADTTGLVLI TSDGQWSHRV
TSPKRECGKT YLVQLADPLK AEWVEQFATG LALRSEEGLT KPATLELLGS HEARLTITEG
KYHQVKRMFA AVGNKVVGLH RESVGEIVLD ESLAPGEWRY LTEAEIASVK
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