| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2956 |
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| Symbol | |
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| ID | 4924050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3504734 |
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| End bp | 3505306 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164566 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_001095081 |
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| Protein GI | 127513884 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.465971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTAATA GGTATTGTTC ACTCACAGGG AAGACAGATT TGAGCGCACT CACGAGTCCA
GATGATGCTC ACCAGCTCCT CGATGCCGTA TTGGTGCAGC GCGCCAAGCA GGGAGATAAG
ACGGCATTTC GACAACTCTA CGATCAGCAT CACAGACGCG TCTACGCCCT CTGTTTTCGT
CTGGCCGGCC AGACCGAGCT GGCAGAAGAA GCCACCCAGG AAACCTTTGT GCGCCTGTGG
CAGAAGCTGC CCCTGTTCGA TGGCAAGAGC CAATTTACCA CCTGGCTCCA CAGCCTGACG
GTGAATCAGG CCCTGAGCTG CATCAAGAAG CATAAGAGCT TCTGGGCCAG GTTTATGCCG
AGCGAAGAGA CTCACGCAGC CGCCATCGAC TTCGACTACC AGGGAGTGGA CAAGTTGTTG
CTGCGTCTAC CGGAGCGCGC CCGTATCGTC TTCGTCCTCT ACGCTCTGGA GGGATATCAG
CATGACGAGA TCGCCAAGCG CCTCAATATA GCCCCCGGCA CCAGCAAGGC GCAGTACCAC
AGGGCCAAGA AACTACTGCA GGAGATGATC TAA
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| Protein sequence | MSNRYCSLTG KTDLSALTSP DDAHQLLDAV LVQRAKQGDK TAFRQLYDQH HRRVYALCFR
LAGQTELAEE ATQETFVRLW QKLPLFDGKS QFTTWLHSLT VNQALSCIKK HKSFWARFMP
SEETHAAAID FDYQGVDKLL LRLPERARIV FVLYALEGYQ HDEIAKRLNI APGTSKAQYH
RAKKLLQEMI
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