| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2951 |
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| Symbol | |
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| ID | 4924088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3496666 |
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| End bp | 3497424 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640164560 |
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| Product | putative lipoprotein |
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| Protein accession | YP_001095076 |
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| Protein GI | 127513879 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4105] DNA uptake lipoprotein |
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| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000165501 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.568121 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATAATT TTGCTAAAGG CGCAGCTATC GCCTTGTTGT CATTGGCCTT AGCGGCGTGT
AGTAGTAAAC CAGAAGATGA TATCGAACTG AGTAAATCTT CCCCCGAAGT CCTCTATTCT
CAAGCCAGAA CCTCGATGGA GCTGGGCAAC TATAGTAAAG CGGTGCGCTC TTTGGAAGCA
CTAGACTCTC GCTATCCCTT CGGTCCACAC AAGACTCAGG TACAATTAGA CCTGATCTAC
GCATACTACA AGTTGGACGA TTCGGCATCG GGCATCGCCA ATATCGATCG CTTCATTCGC
CTTAACCCCA CACATAAAGA TATCGACTAT GTCTACTATA TGCGTGGTCT GGTGAACATG
CAGTCGGACA ACTATATGTT CCACGACATG CTCAACATCG ACAGAACCGA CCGAGATCCC
AAGGCGGCGC AGGACGCCTT TAAAGACTTC GATCGTCTGA TCAAGCAGTA TCCTAACAGC
AAGTATGCCG CCGATGCGCA GAAACGCATG CAGTTCTTGA AAAACCGCCT GGCCAAGTAC
GCCATTACCG TCGCAGAATA CTACATCAAG ATGAATGCCT GGAGCGCCGC CGCCGTGCGC
GCCCAGACAG TGCTGGAAAC CTACCCGGGT ACGCCATCTA CCGAGCGCGC CCTGGAGATC
ATGGCAACCG CCTACGAGGA ACTCGGCCAG CAGAAACTCA AAGATCACGT ACTCATGGTG
ATGCAGAGTA ACTTCCCTAA CAATGATATG CTCAAGTAA
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| Protein sequence | MHNFAKGAAI ALLSLALAAC SSKPEDDIEL SKSSPEVLYS QARTSMELGN YSKAVRSLEA
LDSRYPFGPH KTQVQLDLIY AYYKLDDSAS GIANIDRFIR LNPTHKDIDY VYYMRGLVNM
QSDNYMFHDM LNIDRTDRDP KAAQDAFKDF DRLIKQYPNS KYAADAQKRM QFLKNRLAKY
AITVAEYYIK MNAWSAAAVR AQTVLETYPG TPSTERALEI MATAYEELGQ QKLKDHVLMV
MQSNFPNNDM LK
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