| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2950 |
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| Symbol | |
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| ID | 4924087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3495571 |
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| End bp | 3496542 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164559 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001095075 |
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| Protein GI | 127513878 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00118178 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.148942 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAAG AGATTAATCT AAAAAGCGAG ATCACAGCAA CACAAACCGG GCAGAGATTA
GACCAAACTC TGGCTGAGTT GTTCCCTGAT TACTCCCGTA CACGTATTAA AGAGTGGATA
CAGGCTGGTG CCGTCTACGT CGATGGTATG GTGCAGACTA AGCCGAGAGA AAAGGTGCTC
GAAGGCCAGG AAATTGAGAT CGAAGCCACT CTGAAGGAAG AGATCAAGGC CGAGGCTCAG
GCGATCGATC TGGATATCGT CTACGAAGAT GACCATATTA TCGTGATCAA CAAACAGGCG
GGTCTGGTAG TTCATCCGGG AGCGGGTAAC AGCGACGGCA CCCTGATGAA CGCGCTGCTG
CACCATTGCC CCGAGATTGA GCTCGTTCCC AGGGCCGGTA TCGTCCATCG TCTCGATAAG
GACACCACAG GCTTGATGGT GGTGGCCAAG ACAGTCGAGG CCCAGACCCA TCTGGTCGCT
GCCCTGCAGG CCCGCGAGAT CACCCGTGAG TATGAGGCGA TCGTGAGTGG CACCATGACG
GCCGGCGGCG TGGTGGATGA GCCGATTGCC CGTCACCCAA CCAAGCGTAC CCATATGGCT
GTGCATCATA GTGGCCGCCC CTCTGTGACC CACTACCGTG TGGCAGAGAA GTTCCGCGCC
CATACCCGTC TGCGTCTGCG TCTGGAAACC GGTCGTACCC ACCAGATCAG GGTGCACATG
GCGCACATAG GTCACATCTT GGTGGGGGAT CCCGTCTATG GTGGTCGTCC TCGTCCACCG
AAGAAGGCGA CACCTGAATT GATGGAGGCG CTGAACGGCT TTAAGCGTCA GGCGCTGCAT
GCGGTGCGCC TCGAGCTGGC ACACCCCTTC ACCTGTGAGA TCATGAGCTG GCAGGCGCCA
ATCCCAGAAG ATATGGTGGC CTTGACCCGC GCCCTGCGTG ACGACACTAA GGCTCATCCG
GTGGAATATT AA
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| Protein sequence | MTQEINLKSE ITATQTGQRL DQTLAELFPD YSRTRIKEWI QAGAVYVDGM VQTKPREKVL
EGQEIEIEAT LKEEIKAEAQ AIDLDIVYED DHIIVINKQA GLVVHPGAGN SDGTLMNALL
HHCPEIELVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVA ALQAREITRE YEAIVSGTMT
AGGVVDEPIA RHPTKRTHMA VHHSGRPSVT HYRVAEKFRA HTRLRLRLET GRTHQIRVHM
AHIGHILVGD PVYGGRPRPP KKATPELMEA LNGFKRQALH AVRLELAHPF TCEIMSWQAP
IPEDMVALTR ALRDDTKAHP VEY
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