| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2948 |
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| Symbol | |
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| ID | 4924085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3492164 |
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| End bp | 3494737 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164557 |
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| Product | ATPase |
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| Protein accession | YP_001095073 |
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| Protein GI | 127513876 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0510097 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTCG ATCGTATGAC GAACAAATTC CAGATAGCAA TCTCCGATGC TCAGTCATTA
GCGTTGGGGC GTGACCATCA GTTTATTGAG CCGATCCATC TGATGATGGC GCTGCTTAAT
CAAGATGGTG GCTCAATTCA TCCACTGCTG ACCCAGGCCG GGATCTCGGT CAGCACCTTG
CGTTCCGCCC TGAGCCAGGA GCTTGAACGA TTACCGCAAA TTGAGGGCAC GGGCGGCGAT
GTCCAGCTCT CGCAGGCGCT GATTCGTCTG CTTAACCTGT GTGACAAGCT GGCGCAAAAG
CGCAAAGACA AATATATCTC CAGCGAACTC TTCGTGTTGG CCGCCCTCGA GGGTAGCGAT
GCGTTGGCGC AGTGCCTGAA GAAATCGGGC GCTACCAAGG AGCTGCTGGA GAAGACCATA
GAAGAGGTGC GTCTGGGCAA GAATATCGAC GACCCTAATG CCGAAGATCA GCGCCAGGCA
CTGAAGAAGT TTACCGTGGA TCTCACCGAG CGCGCCGAGC AGGGCAAGCT AGACCCAGTG
ATCGGTCGTG ATGATGAGAT CCGCCGCACC ATCCAGGTGC TGCAACGCCG CAGTAAGAAT
AACCCTGTGC TCATCGGTGA GCCGGGCGTG GGTAAGACGG CCATCGTCGA AGGGCTGGCG
CAGCGCATCA TCAATGGCGA GGTGCCTGAG GGGATCAAGA ATAAGCGGGT CTTGTCACTC
GACTTGGGCG CCTTGGTAGC CGGAGCCAAA TATCGCGGTG AATTCGAGGA ACGCCTCAAG
GCGGTGCTCA ATGAGCTGGC TCAGGAAGAG GGCCAGGTGA TCCTCTTCAT TGATGAGCTG
CATACCATGG TGGGCGCCGG TAAGAGCGAT GGCGCCATGG ATGCGGGGAA TATGCTCAAG
CCAGCTCTGG CCAGGGGCGA CCTGCACTGC GTCGGCGCGA CAACTCTAGA CGAGTACCGT
CAATATATCG AGAAAGACGC CGCCCTCGAG CGACGTTTTC AGAAGGTGCT GGTGGATGAG
CCGAGTGTCG AAGACACCAT CGCCATCCTG CGCGGTCTGA AAGAGCGTTA TGAGCTGCAC
CACCATGTGG AGATCACAGA TCCCGCTATC GTGGCGGCGG CCAGCATGTC GCATCGTTAT
ATCTCAGACA GGAAGCTGCC CGATAAGGCG ATCGATCTTA TCGATGAGGC GGCGTCCAGT
ATTCGCATGC AGATAGACTC AAAACCTGAG CCGCTGGACA GATTAGAGCG CCGCACCATA
CAGCTTAAGC TGGAGGAGCA GGCCCTGAGC AAGGAGAGTG ATGAAGCGAG TCTGCGTCGA
CTCTCCACCT TGCGTAGCGA GCTTGCCGAG GTCGAGGCCA AGGCGGCCGA ACTTAATGAG
GTATGGCATA CCGAGAAGGC GGCGCTGGCG GGCACTCAGC ATATCAAGGC GGATCTCGAG
CAGGCCCGTA TGGATCTTGA GGTAGCCAGA CGCGCCGGCG ATCTGACCCG CATGTCCGAG
CTGCAATATG GCCGTATCCC AGAGCTGGAG AAGCAGCTGG ATCTGGCCGC TCAGGCCGAG
ATGCAGGATA TGACGCTGCT GCGTAACAAG GTTTCCGATG TGGAGATCGC CGAGGTGCTG
TCCAAGGCGA CCGGTATCCC TGTATCTAAG ATGCTCGAAG GGGAGAAAGA GAAGCTGCTG
CACATGGAAG AGGCGCTGCA TACCCGGGTG ATTGGTCAGA ATGAGGCAGT GGATGCGGTG
GCCAACGCCA TCCGTCGTAG CCGCGCTGGC CTTGCGGATC CGAATCGTCC TATCGGTTCC
TTCCTCTTCC TTGGCCCTAC CGGTGTGGGT AAGACTGAGC TGTGTAAGTC GCTGGCGAAG
TTCCTGTTCG ATACCGAAGC GGCAATGGTG CGTATCGATA TGTCCGAGTT TATGGAGAAG
CATTCGGTGT CGCGTCTGGT CGGTGCGCCT CCAGGTTATG TGGGCTATGA AGAGGGCGGT
TATCTGACCG AGGCGGTGAG GCGTAAGCCT TATTCGGTGA TCCTGCTCGA TGAGGTGGAA
AAGGCGCACC CCGATGTGTT CAACATACTG TTGCAGGTGC TGGACGACGG TCGTCTGACC
GATGGCCAGG GACGCACGGT CGATTTTCGT AATTCCGTGG TGATCATGAC CTCTAACCTG
GGGTCAGATG TGATTCAGGA GCGCTTCGGT ATCGCCAGTT ATGCCGAGAT GAAGAGCGAG
GTGATGAATG TGGTGACCCA CAGCTTCAGA CCCGAGTTCC TCAACCGAAT CGATGAAAGC
GTGGTCTTCC ATCCACTTGA GTCTGAACAT ATCGCCCATA TCGCGCAGAT CCAGATAGAT
AATCTGAAGG CGCGTCTGGC GGAGAAAGAC TTTGAGCTTG AGGTGAGTGA TGATGCCTTA
GCCTTAATTG CTCAGGCCGG ATTCGATCCC GTCTATGGTG CAAGGCCGTT GAAACGCGCG
CTGCAGCAAG AGGTGGAAAA TCCGCTGGCT CAGAAACTCT TGAGTGGTGA ACTGTTACCT
GGTGCGCCAA TCAAGGTCGA TGCCGCGGGT GGCGAACTCG CCTTCCATCA ATAA
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| Protein sequence | MRLDRMTNKF QIAISDAQSL ALGRDHQFIE PIHLMMALLN QDGGSIHPLL TQAGISVSTL
RSALSQELER LPQIEGTGGD VQLSQALIRL LNLCDKLAQK RKDKYISSEL FVLAALEGSD
ALAQCLKKSG ATKELLEKTI EEVRLGKNID DPNAEDQRQA LKKFTVDLTE RAEQGKLDPV
IGRDDEIRRT IQVLQRRSKN NPVLIGEPGV GKTAIVEGLA QRIINGEVPE GIKNKRVLSL
DLGALVAGAK YRGEFEERLK AVLNELAQEE GQVILFIDEL HTMVGAGKSD GAMDAGNMLK
PALARGDLHC VGATTLDEYR QYIEKDAALE RRFQKVLVDE PSVEDTIAIL RGLKERYELH
HHVEITDPAI VAAASMSHRY ISDRKLPDKA IDLIDEAASS IRMQIDSKPE PLDRLERRTI
QLKLEEQALS KESDEASLRR LSTLRSELAE VEAKAAELNE VWHTEKAALA GTQHIKADLE
QARMDLEVAR RAGDLTRMSE LQYGRIPELE KQLDLAAQAE MQDMTLLRNK VSDVEIAEVL
SKATGIPVSK MLEGEKEKLL HMEEALHTRV IGQNEAVDAV ANAIRRSRAG LADPNRPIGS
FLFLGPTGVG KTELCKSLAK FLFDTEAAMV RIDMSEFMEK HSVSRLVGAP PGYVGYEEGG
YLTEAVRRKP YSVILLDEVE KAHPDVFNIL LQVLDDGRLT DGQGRTVDFR NSVVIMTSNL
GSDVIQERFG IASYAEMKSE VMNVVTHSFR PEFLNRIDES VVFHPLESEH IAHIAQIQID
NLKARLAEKD FELEVSDDAL ALIAQAGFDP VYGARPLKRA LQQEVENPLA QKLLSGELLP
GAPIKVDAAG GELAFHQ
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