Gene Shew_2940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2940 
Symbol 
ID4922142 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3480004 
End bp3480270 
Gene Length267 bp 
Protein Length88 aa 
Translation table11 
GC content54% 
IMG OID640164545 
Producthypothetical protein 
Protein accessionYP_001095065 
Protein GI127513868 
COG category[S] Function unknown 
COG ID[COG2921] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000039404 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0192635 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAGACA CCAAATTTCA TGAACTCCTA GACTTCCCCG CGGCCTTCCC TTTCAAAGTC 
GTGGGCGACG CCAGAGACAC ACTCGCCGAT GACGTCGTTG CCGTTGTGCA GCGTCACGTG
CCAGGCGACT ATATGCCAAC CTCCAGGGCC TCAAGCAAAG GCAGCTACCA CTCGATCACC
GTCAAGGTAA CGGTTCACAG TAAAGAGCAG ATCGAACTGC TTTACATCGA GTTAGCGGCT
ATCGAAGGGG TTAAGCGCGT CCTCTAA
 
Protein sequence
MLDTKFHELL DFPAAFPFKV VGDARDTLAD DVVAVVQRHV PGDYMPTSRA SSKGSYHSIT 
VKVTVHSKEQ IELLYIELAA IEGVKRVL