| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2939 |
|---|
| Symbol | |
|---|
| ID | 4922141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3478697 |
|---|
| End bp | 3479869 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640164544 |
|---|
| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
|---|
| Protein accession | YP_001095064 |
|---|
| Protein GI | 127513867 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000023213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0234348 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAC TGAATCACAG CTTTAAAACA CTCCTCCTTG TCTCCTCTCT CTCTATCACG
GCAGCCAACG CGGCACCCGT TGTTACGCCT GATGCTCCTA AGGTGGCAGC CAAAGCCTTT
ATCCTGATGG ATTACAACTC GGGCCAGATC ATCGCCGAAG AGAATGCCTA TGAGAGCCTG
AACCCAGCCA GTCTCACCAA GATGATGACC AGCTACGTGA TAGGCCACGA GATCAAGGTG
GGCAACATCT CGCCACAAGA CAAGGTGACC ATTAGTAAGA ATGCCTGGTC GAAGAATTTC
CCCGACTCCT CCAAGATGTT TATCGAGGTG GGCAAGCAGG TCTCTGTCGA AGAGCTCAAC
CGCGGCATCA TCATTCAGTC GGGTAACGAT GCCTGTGTCG CCATGGCCGA ACATATTGCC
GGCACAGAAG ATGGTTTCGT GGATCTGATG AACTCCTGGG CCAAGCAGCT GGGCATGCGT
GACAGCTACT TCGAGAACTC CCACGGCCTG GACTCGGAAA ATCACAAGAC CACAGCCTAC
GACATGGCAC TGCTGGGCGC CGCGCTGATC CGCGACGTAC CCGAGGAGTA CCGCGTCTAC
TCGGAGAAGT CTTTCACCTA TAACGGCATC AAGCAGTACA ACCGTAACGG TCTGCTATGG
GACAAGAGCC TGAACGTCGA TGGCATCAAG ACGGGCCACA CCTCAGGCGC CGGTTACAAC
CTGGTGACTT CGGCAACCAA AGATGGCATG CGCCTAGTGT CTGTAGTCTT GGGCACCGCC
AGCGAGTCGG CCCGTAAGGC CGAGAGCAAG AAGCTTCTCA ACTATGGTTT CCGCTTCTTC
GAGACCATCA CCCCCTACAA GGCGGGCGAC AGCTTTGTAA CCCAGAAGAT CTGGTACGGT
GACAGAGAAT CAGTGGATCT GGGCGTGCTG ACAGATACCC CCATCACCAT TAGCCGTGGC
CAGGCGAAAA ACCTCGAGGC CAACTACGAG CTGAACAAGG AGCTGACTGC CCCGATCGCC
AAGGGTGAGA CAGTAGGCCG CATCTACTTC CAGCTTAACG GCAAAGACAT TGCCCAGTTC
CCACTGGTCA CCCTACAAGA GGTGAACGAA GGCAGCTGGT TCAGCAAGCT GATGGACTAC
TTTAAGCAGA TGTTTGCCAG CTGGTTTAAC TAA
|
|---|
| Protein sequence | MKLLNHSFKT LLLVSSLSIT AANAAPVVTP DAPKVAAKAF ILMDYNSGQI IAEENAYESL
NPASLTKMMT SYVIGHEIKV GNISPQDKVT ISKNAWSKNF PDSSKMFIEV GKQVSVEELN
RGIIIQSGND ACVAMAEHIA GTEDGFVDLM NSWAKQLGMR DSYFENSHGL DSENHKTTAY
DMALLGAALI RDVPEEYRVY SEKSFTYNGI KQYNRNGLLW DKSLNVDGIK TGHTSGAGYN
LVTSATKDGM RLVSVVLGTA SESARKAESK KLLNYGFRFF ETITPYKAGD SFVTQKIWYG
DRESVDLGVL TDTPITISRG QAKNLEANYE LNKELTAPIA KGETVGRIYF QLNGKDIAQF
PLVTLQEVNE GSWFSKLMDY FKQMFASWFN
|
|---|
| |