| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2920 |
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| Symbol | |
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| ID | 4921180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3458959 |
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| End bp | 3459546 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164525 |
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| Product | peptidyl-tRNA hydrolase |
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| Protein accession | YP_001095045 |
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| Protein GI | 127513848 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0193] Peptidyl-tRNA hydrolase |
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| TIGRFAM ID | [TIGR00447] peptidyl-tRNA hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000374558 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0910923 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCAATA TAAAGCTTAT CGTAGGCTTG GCTAATCCAG GCGACAAATA TGAGCAGACT
CGGCACAACG CAGGTGCATG GTATGTCAAC GAGCTGGCAC GGGTATGCGG TGTCAGCCTA
GTGGCCGACA GCAAATACTA TGGCCTGACC GCCAGGGCAA CTCTGTACGG TAAAGATGTG
CGCCTTTTGA TCCCGACCAC CTTTATGAAC CTCAGTGGCA AGTCGGTGGG GGCCTTGGCA
AACTTCTTTC GTATTGCACC CGATGAGATC TTAGTGGCTC ACGATGAGCT GGATATGCCG
CCGGGTGTGG CTAAGTTTAA ATTGGGCGGC GGTCATGGCG GTCATAATGG CCTCAAAGAT
ATCATCGCCA AGCTCGCTAA CGACAAAGGT TTCTATCGAC TGCGGATCGG CATTGGCCAT
CCAGGCGACA AGAGCATGGT CAGCAACTAT GTGCTGGGTA AGGCGCCGCA GACCGAGCAA
CGCCTCATCG AAGAGGTGAT TGACGAGGCG GTGCGCGCCA CCGAGGTGCT CTTTAAGGAA
GACATGAGTA AGGCGATGCA CAGGTTGCAC TCTTACAAGG CCGGTTAA
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| Protein sequence | MSNIKLIVGL ANPGDKYEQT RHNAGAWYVN ELARVCGVSL VADSKYYGLT ARATLYGKDV
RLLIPTTFMN LSGKSVGALA NFFRIAPDEI LVAHDELDMP PGVAKFKLGG GHGGHNGLKD
IIAKLANDKG FYRLRIGIGH PGDKSMVSNY VLGKAPQTEQ RLIEEVIDEA VRATEVLFKE
DMSKAMHRLH SYKAG
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