Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2916 |
Symbol | |
ID | 4921176 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3454282 |
End bp | 3455256 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640164513 |
Product | ribose-phosphate pyrophosphokinase |
Protein accession | YP_001095041 |
Protein GI | 127513844 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism |
COG ID | [COG0462] Phosphoribosylpyrophosphate synthetase |
TIGRFAM ID | [TIGR01251] ribose-phosphate pyrophosphokinase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000010971 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.440092 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGCATA CGCCTGAGGT CCATACAGTG CCTGACATTA AACTATTTGC TGGTAACGCA ACCCCCAGTC TCGCCAAGAA GATAGCAGAT CGCCTATTTT GTAAACTCGG AGACGCTGAG GTTGGCGTTT TCAGTGACGG TGAAATCAGT GTCCAGATTA ACGAAAATGT ACGTGGGGCG GATGTATTTA TCATTCAATC TACGTGTGCA CCTACTAACG ATAACCTGAT GGAACTTATC GTTATGGTAG ACGCGTTACG TCGCGCATCT GCTGGCCGTA TTACTGCGGT TATTCCTTAC TTCGGTTACG CTCGTCAAGA CCGTCGTGTA CGCAGTGCTC GTGTACCTAT TACCGCTAAG GTAGTCGCCG ACTTTCTATC AAGCGTTGGT GTTGACCGCG TATTGACCTG TGACCTGCAC GCCGAGCAGA TCCAGGGCTT CTTCGATGTA CCTGTAGACA ACGTATTCGG TAGCCCAGTG CTGCTGGAAG ATATGCTGGC CAAACAGCTG GACAACCCAG TCGTGGTTTC ACCAGATATC GGTGGTGTAG TACGTGCCCG CGCCGTAGCC AAGCTACTGG ACGATTCAGA TCTGGCTATC ATCGACAAGC GTCGCCCACA GGCGAACGTT GCTCAGGTGA TGCACATCAT TGGTGACGTT CAAGGCCGCG ACTGCATCAT AGTCGACGAC ATGATCGACA CCGGCGGTAC CCTGTGTAAG GCAGCCGAAG CGCTTAAAGA ACACGGTGCT AACCGCGTAT TCGCCTACGC CACTCACCCA GTATTCTCAG GCAACGCGCC TAAGAACATC GCCGAGTCTG TGATCGACGA AGTGATCGTG ACCGACACCA TCCCACTGAG TGAAGAGATG GCGGCACTGG ATAAAGTGAC CCAGCTGACC ATGTCTAGCG TGATGGCTGA AGCTATCCGC CGCGTAAGCA ACGAAGAGTC TATCTCTGCG ATGTTTAAGC ACTAA
|
Protein sequence | MKHTPEVHTV PDIKLFAGNA TPSLAKKIAD RLFCKLGDAE VGVFSDGEIS VQINENVRGA DVFIIQSTCA PTNDNLMELI VMVDALRRAS AGRITAVIPY FGYARQDRRV RSARVPITAK VVADFLSSVG VDRVLTCDLH AEQIQGFFDV PVDNVFGSPV LLEDMLAKQL DNPVVVSPDI GGVVRARAVA KLLDDSDLAI IDKRRPQANV AQVMHIIGDV QGRDCIIVDD MIDTGGTLCK AAEALKEHGA NRVFAYATHP VFSGNAPKNI AESVIDEVIV TDTIPLSEEM AALDKVTQLT MSSVMAEAIR RVSNEESISA MFKH
|
| |