Gene Shew_2916 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2916 
Symbol 
ID4921176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3454282 
End bp3455256 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content52% 
IMG OID640164513 
Productribose-phosphate pyrophosphokinase 
Protein accessionYP_001095041 
Protein GI127513844 
COG category[E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism 
COG ID[COG0462] Phosphoribosylpyrophosphate synthetase 
TIGRFAM ID[TIGR01251] ribose-phosphate pyrophosphokinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000010971 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.440092 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCATA CGCCTGAGGT CCATACAGTG CCTGACATTA AACTATTTGC TGGTAACGCA 
ACCCCCAGTC TCGCCAAGAA GATAGCAGAT CGCCTATTTT GTAAACTCGG AGACGCTGAG
GTTGGCGTTT TCAGTGACGG TGAAATCAGT GTCCAGATTA ACGAAAATGT ACGTGGGGCG
GATGTATTTA TCATTCAATC TACGTGTGCA CCTACTAACG ATAACCTGAT GGAACTTATC
GTTATGGTAG ACGCGTTACG TCGCGCATCT GCTGGCCGTA TTACTGCGGT TATTCCTTAC
TTCGGTTACG CTCGTCAAGA CCGTCGTGTA CGCAGTGCTC GTGTACCTAT TACCGCTAAG
GTAGTCGCCG ACTTTCTATC AAGCGTTGGT GTTGACCGCG TATTGACCTG TGACCTGCAC
GCCGAGCAGA TCCAGGGCTT CTTCGATGTA CCTGTAGACA ACGTATTCGG TAGCCCAGTG
CTGCTGGAAG ATATGCTGGC CAAACAGCTG GACAACCCAG TCGTGGTTTC ACCAGATATC
GGTGGTGTAG TACGTGCCCG CGCCGTAGCC AAGCTACTGG ACGATTCAGA TCTGGCTATC
ATCGACAAGC GTCGCCCACA GGCGAACGTT GCTCAGGTGA TGCACATCAT TGGTGACGTT
CAAGGCCGCG ACTGCATCAT AGTCGACGAC ATGATCGACA CCGGCGGTAC CCTGTGTAAG
GCAGCCGAAG CGCTTAAAGA ACACGGTGCT AACCGCGTAT TCGCCTACGC CACTCACCCA
GTATTCTCAG GCAACGCGCC TAAGAACATC GCCGAGTCTG TGATCGACGA AGTGATCGTG
ACCGACACCA TCCCACTGAG TGAAGAGATG GCGGCACTGG ATAAAGTGAC CCAGCTGACC
ATGTCTAGCG TGATGGCTGA AGCTATCCGC CGCGTAAGCA ACGAAGAGTC TATCTCTGCG
ATGTTTAAGC ACTAA
 
Protein sequence
MKHTPEVHTV PDIKLFAGNA TPSLAKKIAD RLFCKLGDAE VGVFSDGEIS VQINENVRGA 
DVFIIQSTCA PTNDNLMELI VMVDALRRAS AGRITAVIPY FGYARQDRRV RSARVPITAK
VVADFLSSVG VDRVLTCDLH AEQIQGFFDV PVDNVFGSPV LLEDMLAKQL DNPVVVSPDI
GGVVRARAVA KLLDDSDLAI IDKRRPQANV AQVMHIIGDV QGRDCIIVDD MIDTGGTLCK
AAEALKEHGA NRVFAYATHP VFSGNAPKNI AESVIDEVIV TDTIPLSEEM AALDKVTQLT
MSSVMAEAIR RVSNEESISA MFKH