| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2915 |
|---|
| Symbol | ipk |
|---|
| ID | 4921175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3453389 |
|---|
| End bp | 3454243 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640164512 |
|---|
| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
|---|
| Protein accession | YP_001095040 |
|---|
| Protein GI | 127513843 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000355212 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.432402 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGCA ATAGATCCAC CGCCTGGCCG GCACCGGCTA AACTCAACCT GTTTCTCCAC
GTCAACGGCC GCCGCGCCGA TGGCTACCAT GAACTACAGA CCCTGTTTCA GTTTATCGAC
TACTGCGACT ACCTGGATTT TGCCGTCAAC GACAGCGGCA GCCTCACCCT GCATTCCGAG
ATGGAAGCTG TTGTTGCAAA TAGCGATAAC TTAATTCTAA AAGCTGCAAA ATCTTTGCAG
GAGTACACAG GTACCCATCA AGGCGCCGAG ATCTGGCTGG ATAAAAAACT GCCAATGGGC
GGCGGCATAG GTGGCGGCTC ATCCGATGCG GCCACCACAC TGGTCGCCCT GAATCATCTG
TGGCAGACTC AATTATCACA GGATGAACTG GCAAAGATTG GCCTGTCTCT TGGCGCTGAT
GTCCCTGTTT TTATTAATGG TTTAGCGGCA TTTGCCGAAG GGGTTGGCGA GAAGTTGATC
CCGGTCGAGG CGCCGGAAAA TTGGTACCTG ATCCTGACCC CGGATGTTCA CGTTTCCACC
GCCGAGGTGT TTAACGATCC CCTGCTACCA CGGGATACGC CTAAGCTCTC CATGGATGAT
TTAATGAGCA GTGACTGGCA CAACGATTGC CAACCCAGAG TCGCCGAGCG ATACCCCCAA
GTTGCCAAAG CATTGGCGTG GCTGATAGAA TATGCGCCGT CCAGAATGAC GGGAACCGGA
GCATGTGTAT TCGGTATCTT CGACACACGC CAGCAGGCAG AGCATGTTTT TGCCAAATTG
CCAGCGGGTT TGTGCGGTTT CATCGCCAAG GGGACAAATA AATCACCATT AGCGTTGCGG
TTAACGCAGC ACTAA
|
|---|
| Protein sequence | MTSNRSTAWP APAKLNLFLH VNGRRADGYH ELQTLFQFID YCDYLDFAVN DSGSLTLHSE
MEAVVANSDN LILKAAKSLQ EYTGTHQGAE IWLDKKLPMG GGIGGGSSDA ATTLVALNHL
WQTQLSQDEL AKIGLSLGAD VPVFINGLAA FAEGVGEKLI PVEAPENWYL ILTPDVHVST
AEVFNDPLLP RDTPKLSMDD LMSSDWHNDC QPRVAERYPQ VAKALAWLIE YAPSRMTGTG
ACVFGIFDTR QQAEHVFAKL PAGLCGFIAK GTNKSPLALR LTQH
|
|---|
| |