| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2885 |
|---|
| Symbol | |
|---|
| ID | 4921814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3424096 |
|---|
| End bp | 3424743 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640164482 |
|---|
| Product | 2OG-Fe(II) oxygenase |
|---|
| Protein accession | YP_001095010 |
|---|
| Protein GI | 127513813 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3145] Alkylated DNA repair protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGC AAGGGTTTGG GTTTGAAGAT ATAGGTCACG AGGCCAAAGA TGAAGGGGCT
GCGCAGCAAC AGACTCCCAG GCCGCCTATT ACCCTGATCC CTGGGTATCT CAATCAGGCT
CAGCAAGGCG CCTTGATCGA TGAGGCCGAG CACTATCCCT TCAGCCGACC AGCGCTGACA
CTCTTTGGCC GCACCCATCC CATCCCCAGA CGTCAGGTAT GGTTTGGCGA CGACGGCTGC
GATTATCTCT ATTCAGGCCT CTTCATTCGC GCCGAGCCTT GGCCCAAGTA TGCCCTGCGC
CTGCGGCAGA AACTGCAGCG TGACTTTGGC CTGGTAAGCA ATGGCGTGCT GGTCAATCAT
TATCGTGACG GCAGCGACAC CATGGGCTGG CACAGCGACG ATGAGGCCGA GATCGTGCCG
GGCTCGGATA TCGCCTCAGT GACACTCGGG GCCAGTCGCT CTTTCTTTCT GCGCCATACT
CAGAGTAACA CCAAGGTCGA GCTGATGCTC AATAGCGGCG ATCTGTTGAT CATGCACTGG
CCCATGCAGT CGAGCTGGCA ACATGCGCTG CCGAAACGAG CCAAGGTAAC CCAGCCTAGA
CTAAACTTGA CCTATCGGCA TTTAATTCCA CACTTTCATC AGGGGTAA
|
|---|
| Protein sequence | MQQQGFGFED IGHEAKDEGA AQQQTPRPPI TLIPGYLNQA QQGALIDEAE HYPFSRPALT
LFGRTHPIPR RQVWFGDDGC DYLYSGLFIR AEPWPKYALR LRQKLQRDFG LVSNGVLVNH
YRDGSDTMGW HSDDEAEIVP GSDIASVTLG ASRSFFLRHT QSNTKVELML NSGDLLIMHW
PMQSSWQHAL PKRAKVTQPR LNLTYRHLIP HFHQG
|
|---|
| |