Gene Shew_2871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2871 
Symbol 
ID4921843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3411830 
End bp3412909 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content60% 
IMG OID640164468 
ProductDNA polymerase IV 
Protein accessionYP_001094996 
Protein GI127513799 
COG category[L] Replication, recombination and repair 
COG ID[COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAAAGA TTATTCATGT AGACATGGAC TGCTTCTTCG CGGCGGTCGA GATGCGTGAT 
TTTCCCGAGC TTAGGGGCAA GCCCATTGCC GTCGGCGGAC GCAGCGATCG CCGCGGTGTC
ATCAGCACCT GTAACTACGA GGCGCGCAAG TTTGGCGTGC GCTCGGCCAT GGCCTCCGCC
TATGCCCTCA AGCTCTGCCC GGATCTCATC CTGGTGCCCG GACGCATGTC TGTCTACAAG
GAGGTGTCGG CGCAGATCCG TGAGGTGTTT GCCCGCTACA CTGAGCTGAT CGAGCCGCTC
TCCCTGGATG AAGCCTATCT GGATGTCAGT GACTGCACCC AACACCAGGG CTCGGCCACG
CTGATCGCCG AGGCGATTCG CCGGGAGATC TTCGAGGTGA CCGGGCTCAC CGCCTCTGCC
GGTATCGCGC CGGTGAAGTT TCTGGCCAAG ATAGCTTCGG ATCTCAATAA GCCCAACGGC
CAGTATGTGA TCACTCCGCA GATGATCCCC GAGTTTGTGA AGACACTGGC GCTGATTAAG
ATCCCCGGTG TCGGTAAGGT GACCGCCGCC AAGTTGGAAA CCATGGGGCT GATTACCTGC
GCCGATGTGC AGGCCTGTAG CCGTCAGAGC CTGATGGAGC GCTTCGGTAA GTTTGGCGGC
GTGCTCTATG ACAGGGCGCA GGGGATAGAC CCCCGCGGCA TCTCGCCCCA CAGGGAACGT
AAGTCTGTCG GTGTCGAGAC CACCCTGGCC AAAGATATCT ACACTTATGA GCAGTGTCAG
GCGGTGATGC CTCAGCTGAT CCAGGAGCTG TCGGGGCGCA TCAGTCGCAG CGCCAAGTCG
CGTCGTATTC ACAAGCAGGT GGTTAAGCTC AAGTTCGATG ACTTCAAACA GACCACCATA
GAGCAGCGCA GCGACGAGGT CTCGGTGAAG CTGTTTTACG ACCTGCTTAA ACAGGCGCTG
GAGCGCCGCG CGGGCCGAGG CATTCGTCTG CTGGGGGTGT CGGTTGGGCT TGAGAGCGAG
GCTGTGGGGG CCGGGCTCGA TGAGGAGGTG CATGGGGCGC AGATGGATCT CGGGTTTTAG
 
Protein sequence
MKKIIHVDMD CFFAAVEMRD FPELRGKPIA VGGRSDRRGV ISTCNYEARK FGVRSAMASA 
YALKLCPDLI LVPGRMSVYK EVSAQIREVF ARYTELIEPL SLDEAYLDVS DCTQHQGSAT
LIAEAIRREI FEVTGLTASA GIAPVKFLAK IASDLNKPNG QYVITPQMIP EFVKTLALIK
IPGVGKVTAA KLETMGLITC ADVQACSRQS LMERFGKFGG VLYDRAQGID PRGISPHRER
KSVGVETTLA KDIYTYEQCQ AVMPQLIQEL SGRISRSAKS RRIHKQVVKL KFDDFKQTTI
EQRSDEVSVK LFYDLLKQAL ERRAGRGIRL LGVSVGLESE AVGAGLDEEV HGAQMDLGF