Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2871 |
Symbol | |
ID | 4921843 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3411830 |
End bp | 3412909 |
Gene Length | 1080 bp |
Protein Length | 359 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640164468 |
Product | DNA polymerase IV |
Protein accession | YP_001094996 |
Protein GI | 127513799 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAAAGA TTATTCATGT AGACATGGAC TGCTTCTTCG CGGCGGTCGA GATGCGTGAT TTTCCCGAGC TTAGGGGCAA GCCCATTGCC GTCGGCGGAC GCAGCGATCG CCGCGGTGTC ATCAGCACCT GTAACTACGA GGCGCGCAAG TTTGGCGTGC GCTCGGCCAT GGCCTCCGCC TATGCCCTCA AGCTCTGCCC GGATCTCATC CTGGTGCCCG GACGCATGTC TGTCTACAAG GAGGTGTCGG CGCAGATCCG TGAGGTGTTT GCCCGCTACA CTGAGCTGAT CGAGCCGCTC TCCCTGGATG AAGCCTATCT GGATGTCAGT GACTGCACCC AACACCAGGG CTCGGCCACG CTGATCGCCG AGGCGATTCG CCGGGAGATC TTCGAGGTGA CCGGGCTCAC CGCCTCTGCC GGTATCGCGC CGGTGAAGTT TCTGGCCAAG ATAGCTTCGG ATCTCAATAA GCCCAACGGC CAGTATGTGA TCACTCCGCA GATGATCCCC GAGTTTGTGA AGACACTGGC GCTGATTAAG ATCCCCGGTG TCGGTAAGGT GACCGCCGCC AAGTTGGAAA CCATGGGGCT GATTACCTGC GCCGATGTGC AGGCCTGTAG CCGTCAGAGC CTGATGGAGC GCTTCGGTAA GTTTGGCGGC GTGCTCTATG ACAGGGCGCA GGGGATAGAC CCCCGCGGCA TCTCGCCCCA CAGGGAACGT AAGTCTGTCG GTGTCGAGAC CACCCTGGCC AAAGATATCT ACACTTATGA GCAGTGTCAG GCGGTGATGC CTCAGCTGAT CCAGGAGCTG TCGGGGCGCA TCAGTCGCAG CGCCAAGTCG CGTCGTATTC ACAAGCAGGT GGTTAAGCTC AAGTTCGATG ACTTCAAACA GACCACCATA GAGCAGCGCA GCGACGAGGT CTCGGTGAAG CTGTTTTACG ACCTGCTTAA ACAGGCGCTG GAGCGCCGCG CGGGCCGAGG CATTCGTCTG CTGGGGGTGT CGGTTGGGCT TGAGAGCGAG GCTGTGGGGG CCGGGCTCGA TGAGGAGGTG CATGGGGCGC AGATGGATCT CGGGTTTTAG
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Protein sequence | MKKIIHVDMD CFFAAVEMRD FPELRGKPIA VGGRSDRRGV ISTCNYEARK FGVRSAMASA YALKLCPDLI LVPGRMSVYK EVSAQIREVF ARYTELIEPL SLDEAYLDVS DCTQHQGSAT LIAEAIRREI FEVTGLTASA GIAPVKFLAK IASDLNKPNG QYVITPQMIP EFVKTLALIK IPGVGKVTAA KLETMGLITC ADVQACSRQS LMERFGKFGG VLYDRAQGID PRGISPHRER KSVGVETTLA KDIYTYEQCQ AVMPQLIQEL SGRISRSAKS RRIHKQVVKL KFDDFKQTTI EQRSDEVSVK LFYDLLKQAL ERRAGRGIRL LGVSVGLESE AVGAGLDEEV HGAQMDLGF
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