Gene Shew_2857 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2857 
Symbol 
ID4922236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3388466 
End bp3389362 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content58% 
IMG OID640164454 
ProductLysR family transcriptional regulator 
Protein accessionYP_001094982 
Protein GI127513785 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCTAC AAAATGTTGA TTTAAATCTG TTTGTGGTGT TCGACGCCAT CTACACCGAG 
CGCAACCTCA CCCGGGCAGC CGAGCGCCTC TGTATCACTC AACCCGCGGT CAGCAATGCC
CTGAGCCGGC TGCGAACCAG CCTCAACGAC CCCCTGTTTA TCCGCACTCC CAAGGCCATG
ATGCCCACGC CCGTGGCAGA AAATATGATA GGCCAGGTGC GTGAAGCCCT TAAGTTGCTG
AGCAGCAGCA TGCACCTTGG GGACAGCTTC GACCCCCTAC TTGCGGAGCA TCACTTTCAG
CTGGGGATGT TCGATGTGAC CGAAGAGACC ATGTTGCCAT CATTGCTTGC CGCCTTGCAG
GTGCATGCGC CCAGGCTGTC TATCTCCAGC TACCCGGTAT CGCGAGAGGA GATGCTCAAG
GAGTTTGTCT CCGGCAGGCT GGACCTGGCC ATCGACGCCC CCATAGTGAC CCATCCCGAC
CTTTACCATC ATCCACTGGT TACTGTGCCC TATGTCTGCC TGGTGAGGAA GGATCATCCT
GAGGTTGGCG ACACCCTGAG CCTGGAGCAG TATTTGGCCC TATCCCATGT TCATGTTTCC
AGCCGCCGTC AGGGGGTAGG TTATGTCGAT GCGGCGCTAA ACCGTCTCGG CAAGCATCGC
AACATCCAGG TACGCACCAA GCATCACCAG GCCGCGCCCA AGCTGGTGGC CGAGACGAAT
CTGGCGACCA CAGTCCCCGA GAGCCTGGCG AAAAATACCG ACCTTAAGGT GCTTAAGCTG
CCCTTTGAGG TGGAGCCGAT AGAGTGGCAT CTCTACTGGC ATCGCAGCGC CGATCAGGAT
AACGCCAACC GCTGGTTGCG GGAGTTTATT ACTGCCTTGA TGCAGGGACA GGGGTAG
 
Protein sequence
MRLQNVDLNL FVVFDAIYTE RNLTRAAERL CITQPAVSNA LSRLRTSLND PLFIRTPKAM 
MPTPVAENMI GQVREALKLL SSSMHLGDSF DPLLAEHHFQ LGMFDVTEET MLPSLLAALQ
VHAPRLSISS YPVSREEMLK EFVSGRLDLA IDAPIVTHPD LYHHPLVTVP YVCLVRKDHP
EVGDTLSLEQ YLALSHVHVS SRRQGVGYVD AALNRLGKHR NIQVRTKHHQ AAPKLVAETN
LATTVPESLA KNTDLKVLKL PFEVEPIEWH LYWHRSADQD NANRWLREFI TALMQGQG