Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2857 |
Symbol | |
ID | 4922236 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3388466 |
End bp | 3389362 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640164454 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001094982 |
Protein GI | 127513785 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCTAC AAAATGTTGA TTTAAATCTG TTTGTGGTGT TCGACGCCAT CTACACCGAG CGCAACCTCA CCCGGGCAGC CGAGCGCCTC TGTATCACTC AACCCGCGGT CAGCAATGCC CTGAGCCGGC TGCGAACCAG CCTCAACGAC CCCCTGTTTA TCCGCACTCC CAAGGCCATG ATGCCCACGC CCGTGGCAGA AAATATGATA GGCCAGGTGC GTGAAGCCCT TAAGTTGCTG AGCAGCAGCA TGCACCTTGG GGACAGCTTC GACCCCCTAC TTGCGGAGCA TCACTTTCAG CTGGGGATGT TCGATGTGAC CGAAGAGACC ATGTTGCCAT CATTGCTTGC CGCCTTGCAG GTGCATGCGC CCAGGCTGTC TATCTCCAGC TACCCGGTAT CGCGAGAGGA GATGCTCAAG GAGTTTGTCT CCGGCAGGCT GGACCTGGCC ATCGACGCCC CCATAGTGAC CCATCCCGAC CTTTACCATC ATCCACTGGT TACTGTGCCC TATGTCTGCC TGGTGAGGAA GGATCATCCT GAGGTTGGCG ACACCCTGAG CCTGGAGCAG TATTTGGCCC TATCCCATGT TCATGTTTCC AGCCGCCGTC AGGGGGTAGG TTATGTCGAT GCGGCGCTAA ACCGTCTCGG CAAGCATCGC AACATCCAGG TACGCACCAA GCATCACCAG GCCGCGCCCA AGCTGGTGGC CGAGACGAAT CTGGCGACCA CAGTCCCCGA GAGCCTGGCG AAAAATACCG ACCTTAAGGT GCTTAAGCTG CCCTTTGAGG TGGAGCCGAT AGAGTGGCAT CTCTACTGGC ATCGCAGCGC CGATCAGGAT AACGCCAACC GCTGGTTGCG GGAGTTTATT ACTGCCTTGA TGCAGGGACA GGGGTAG
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Protein sequence | MRLQNVDLNL FVVFDAIYTE RNLTRAAERL CITQPAVSNA LSRLRTSLND PLFIRTPKAM MPTPVAENMI GQVREALKLL SSSMHLGDSF DPLLAEHHFQ LGMFDVTEET MLPSLLAALQ VHAPRLSISS YPVSREEMLK EFVSGRLDLA IDAPIVTHPD LYHHPLVTVP YVCLVRKDHP EVGDTLSLEQ YLALSHVHVS SRRQGVGYVD AALNRLGKHR NIQVRTKHHQ AAPKLVAETN LATTVPESLA KNTDLKVLKL PFEVEPIEWH LYWHRSADQD NANRWLREFI TALMQGQG
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