Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2842 |
Symbol | |
ID | 4922272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3369057 |
End bp | 3369845 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640164439 |
Product | peptidase M48, Ste24p |
Protein accession | YP_001094967 |
Protein GI | 127513770 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000706614 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0604809 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGT TAACCGCAGC GCTGGTAATA TTTTTATTAG CCGGCTGCGC TACCACACAA TCGCCCACAG GGCGTAAACA GACCCTGCTG TTTTCAGCCC AGCAGATGGA TCAGATGGGG GCCGAATCTT TTGCTGAGAT GAAGAAGCAG CAGAAGGTGA GCCAGGATAA GCAGGTCAAT CAGTATGTGG CCTGTGTGGC CAACCGCATC ACCTCGGTAT TGCCGGGCCG TCAGCCCAAC TGGGAGGTGG TGGTGTTTGA ATCGGATCAG GTTAACGCCT TCGCCTTGCC CGGTGGCCAC ATTGGTGTCT ATACCGGATT GCTCAAGGTG GCGAAGAATC AGGATCAGCT GGCGACCGTT ATCGGCCATG AGGTGGCCCA CGTGCTGGCC AATCACAGCA ACGAGCATGT GTCACGGGCA CAGATGACAG GTGTTGGCAT GCAGATCGCC GGCGCCGCCA TCGATGTCAG CGGCCTGAGC AACAAAGACC TATACATGTC GGCCCTTGGC CTGGGCGCTC AATATGGCTT TATCCTGCCC TATGGCCGTG CCCAGGAGAG CGAGGCCGAT GTGATGGGCG TCGAGCTGAT GGCCAGAGCC GGGTTTGACC CCAGCCAGAG CATCAGTCTG TGGCAGAACA TGGCTAAGGC TGGAGGCAGT CAGGGTCCCG AGCTGTTATC GACCCATCCG TCTCATGACC ATCGCATCGC CGATCTGCAG CAGATGCTGC CAGAGGTGAC GCCGCTTTAT CGAGCCGCGA GCGCCGGTGG AAAAAATCGC TGTGACTAG
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Protein sequence | MKQLTAALVI FLLAGCATTQ SPTGRKQTLL FSAQQMDQMG AESFAEMKKQ QKVSQDKQVN QYVACVANRI TSVLPGRQPN WEVVVFESDQ VNAFALPGGH IGVYTGLLKV AKNQDQLATV IGHEVAHVLA NHSNEHVSRA QMTGVGMQIA GAAIDVSGLS NKDLYMSALG LGAQYGFILP YGRAQESEAD VMGVELMARA GFDPSQSISL WQNMAKAGGS QGPELLSTHP SHDHRIADLQ QMLPEVTPLY RAASAGGKNR CD
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