Gene Shew_2842 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2842 
Symbol 
ID4922272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3369057 
End bp3369845 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content58% 
IMG OID640164439 
Productpeptidase M48, Ste24p 
Protein accessionYP_001094967 
Protein GI127513770 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000706614 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0604809 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAGT TAACCGCAGC GCTGGTAATA TTTTTATTAG CCGGCTGCGC TACCACACAA 
TCGCCCACAG GGCGTAAACA GACCCTGCTG TTTTCAGCCC AGCAGATGGA TCAGATGGGG
GCCGAATCTT TTGCTGAGAT GAAGAAGCAG CAGAAGGTGA GCCAGGATAA GCAGGTCAAT
CAGTATGTGG CCTGTGTGGC CAACCGCATC ACCTCGGTAT TGCCGGGCCG TCAGCCCAAC
TGGGAGGTGG TGGTGTTTGA ATCGGATCAG GTTAACGCCT TCGCCTTGCC CGGTGGCCAC
ATTGGTGTCT ATACCGGATT GCTCAAGGTG GCGAAGAATC AGGATCAGCT GGCGACCGTT
ATCGGCCATG AGGTGGCCCA CGTGCTGGCC AATCACAGCA ACGAGCATGT GTCACGGGCA
CAGATGACAG GTGTTGGCAT GCAGATCGCC GGCGCCGCCA TCGATGTCAG CGGCCTGAGC
AACAAAGACC TATACATGTC GGCCCTTGGC CTGGGCGCTC AATATGGCTT TATCCTGCCC
TATGGCCGTG CCCAGGAGAG CGAGGCCGAT GTGATGGGCG TCGAGCTGAT GGCCAGAGCC
GGGTTTGACC CCAGCCAGAG CATCAGTCTG TGGCAGAACA TGGCTAAGGC TGGAGGCAGT
CAGGGTCCCG AGCTGTTATC GACCCATCCG TCTCATGACC ATCGCATCGC CGATCTGCAG
CAGATGCTGC CAGAGGTGAC GCCGCTTTAT CGAGCCGCGA GCGCCGGTGG AAAAAATCGC
TGTGACTAG
 
Protein sequence
MKQLTAALVI FLLAGCATTQ SPTGRKQTLL FSAQQMDQMG AESFAEMKKQ QKVSQDKQVN 
QYVACVANRI TSVLPGRQPN WEVVVFESDQ VNAFALPGGH IGVYTGLLKV AKNQDQLATV
IGHEVAHVLA NHSNEHVSRA QMTGVGMQIA GAAIDVSGLS NKDLYMSALG LGAQYGFILP
YGRAQESEAD VMGVELMARA GFDPSQSISL WQNMAKAGGS QGPELLSTHP SHDHRIADLQ
QMLPEVTPLY RAASAGGKNR CD