Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2825 |
Symbol | truB |
ID | 4922495 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3348630 |
End bp | 3349577 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640164420 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_001094950 |
Protein GI | 127513753 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.791691 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00423146 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCGCGTA AACCTAGAGG TCGCTTGGTC GACGGCATAG TGCTGCTGGA CAAAGACACG GGAATGAGCT CCAACTTCGC CTTACAGAGA GTAAAGCGAA TCTACAACGC CGCCAAGGCG GGTCATACCG GCGCGTTGGA TCCTCTAGCG ACCGGCATGC TACCGATCTG CCTGGGGGAG GCCACCAAAT TTTCGCAGCA TCTGCTCGAT GCCGATAAAC GTTATCTGGT GACCGCCAAG CTAGGTGTGC GCACAGACAC CAGCGACTCA GACGGTGAGG TGGTGCAGAC GCGCCCGATT AACTTCACCG AGCAGCAGCT CGAAGAGGCG CTGGAGCATT TTCGTGGTGA GACCATGCAG GTGCCCTCTA TGTACTCGGC GCTCAAGTAT CAGGGCCAGC CCCTGTACAA GTACGCCAGA GAAGGCAAAG AGGTGCCGCG CGAGGCGCGT CCTATCAAGG TCTTCGAGCT TAACTTTATT AAGCTTGAGG GTGACGAGCT GACCCTGGAC ATCCACTGCT CCAAGGGGAC CTATATCCGC ACCATTACCG ATGATCTCGG TGAGATGCTG GGCTGTGGTG CTCATGTCAT CATGCTGCGC CGCACAGGCG TTGCCGGTTA TCCTTACGAT AAGATGGTGA CGCTGGAGCA GCTCGAGGCA TTGCTTGCCA AGGCGCAGGA AGAGGAGCGT CCACCTAAGG AACTGCTGGA TCCTTTGTTG CTGCCCATGG ATACTGCGGT GAGCGGCCTC AAAGAGATTA ATGTCTCTGA CGAGCTGGCC CACTATCTGA TGAACGGTAA CCCGGTTCAG GTGGCTAATT TGCCCATCGA TGAGTTGGTG CGTATCACCC TAGGTGAAGC GAAACAGTTT GTCGGTATCG GCCAGATGAA CGACGATGGC TTGCTGGCGC CTAAGCGCCT GGTGGTATTG CACGACGAGC AGGCTTGA
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Protein sequence | MARKPRGRLV DGIVLLDKDT GMSSNFALQR VKRIYNAAKA GHTGALDPLA TGMLPICLGE ATKFSQHLLD ADKRYLVTAK LGVRTDTSDS DGEVVQTRPI NFTEQQLEEA LEHFRGETMQ VPSMYSALKY QGQPLYKYAR EGKEVPREAR PIKVFELNFI KLEGDELTLD IHCSKGTYIR TITDDLGEML GCGAHVIMLR RTGVAGYPYD KMVTLEQLEA LLAKAQEEER PPKELLDPLL LPMDTAVSGL KEINVSDELA HYLMNGNPVQ VANLPIDELV RITLGEAKQF VGIGQMNDDG LLAPKRLVVL HDEQA
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