| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2822 |
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| Symbol | |
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| ID | 4922492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3343826 |
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| End bp | 3345928 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640164417 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001094947 |
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| Protein GI | 127513750 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000990055 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000418907 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAATCCAA TCGTAAAGAG TTTTGAATAT GGTCAGCACA CAGTCACGCT AGAGACTGGG
GTTATTGCAC GTCAAGCAGA CGCAGCTGTT TTGGCAAGTA TGGGCGATAC AACAGTATTG
GTTACTGTTG TTGGCAAGAA AGCTGAAGAG CCAGGTCGTG ACTTTTTCCC GTTAACCGTT
AATTACCAGG AAAAAACTTA CGCTGCGGGT AAAATCCCTG GTGGATTCTT CAAGCGTGAA
GGTCGTCCAT CTGAAGGCGA GACCCTCACT GCACGTCTGA TTGACCGTCC TATTCGTCCT
CTATTCCCTA ATGGTTTTAA GAACGAAGTT CAGGTGATCA TCACTGTGGT TTCTGTTGAT
CCAGAAATCA GCCCAGAAGT GATCTCTATG ATCGGTACTT CTGCGGCACT GTCTATCTCA
GGCATTCCAT TCAACGGTCC ACTGGGTTCT GCTCGTGTGG GTTATGTCGA TGGCGAGTAC
ATCCTCAACC CAACGGTTTC ACAGCTAGAA AACAGCCAGC TGGAACTGTC TGTTGCCGGT
ACTGAAAATG CAGTACTTAT GGTTGAGTCT GAAGCCGATG CGCTGCCAGA AGAAGTGATG
CTTGGCGCCG TGGTTTACGG TCATGAGCAA CAGCAAGTTG TTATCCAGGC GATCAAAGAG
CTAAAGGCCG AAGTTAACAA GCCAATGTGG GACTGGACAG CTCCAGTACA AAATGAAGAG
CTGGTTGCTA AGGTTAAAGA TTTGGCCGAA GCGGGTCTAA CCGAAGCGTA CCAGATTGTG
GTTAAGCAAG ATCGTTATGC TCAGGTTGAT GTCGTTAAAA CGGCGGCTAA AGAAGCATTG
CTGGCTGAAA ACCCAGATGC CGATGCACGC GAAATTGACG GCCTGCTTGG CAGCCTAGAG
AAGAAAGTGG TTCGTAGCCG CATCATCGCG GGCAACCCAC GTATCGACGG TCGTGAGCCT
GACATGGTTC GTGCTCTGAG CGTGATGGCG GGCGTACTGC CACGTACTCA CGGTAGTGCT
CTGTTCACTC GTGGTGAAAC TCAGGCACTG GTGACTTGTA CCTTAGGTAC TGAGCGTGAC
GCACAGAAGA TCGACAGCAT CATGGGCGAG CAAACCAGTC GCTTCATGTT GCACTACAAC
TTCCCTCCAT ACTCAGTGGG TGAAACCGGT ATGGTTGGCT CGCCTAAGCG TCGTGAAATC
GGTCACGGTA AGCTGGCATG GCGTGGTATC CACGCGGTAA TGCCAACGGC TGAAGAGTTC
CCATACAGCA TCCGCGTAGT ATCTGAGATC ACCGAATCTA ACGGTTCAAG CTCAATGGCG
TCTGTGTGTG GTACTTCACT GGCGCTGATG GATGCCGGTG TGCCAATCAA GACTTCAGTT
GCTGGTATCG CCATGGGTCT GGTTAAAGAA GGCGACGATT TCGTTGTACT TTCTGACATT
CTGGGCGACG AAGACCACTT GGGTGACATG GACTTCAAAG TGGCTGGTAC CCGTGACGGT
GTTACCGCGC TGCAGATGGA TATCAAGATC GAAGGTATCA CCAAAGAGAT CATGCAGATC
GCTCTGCAAC AAGCCTACGG TGCTCGCGTA CACATCCTGA ATGTGATGGA CCAGGCTATC
TCTGGCCACC GCGCCGAGAT CTCAGATCAC GCGCCGCGTA TCACCACACT GAAGATCAAC
CCTGAGAAGA TCCGTGACGT GATCGGTAAA GGCGGTGCGA CTATCCGTGC GCTGACCGAA
GAGACTGGCA CCACTATCGA GCTGGAAGAT GACGGTACCG TTAAGATCGC TTCTGCCAAC
GGCGATGCGA CCAAAGAAGC TATCCGTCGT ATCCAGGAGA TCACTGCCGA AGTTGAAGTG
GGCACTGTCT ACAACGGTAA GGTTGTTCGT ATCGTTGACT TCGGTGCCTT CGTGACTATC
CTGCCGGGTA AAGACGGTCT GGTACACATC TCGCAAATCG CCGAGGAGCG TGTTGCCAAC
GTTTCTGACT ACCTGGAAGT GGGTCAGGAA GTGAAGGTTA AGGTGATGGA AGTCGATCGC
CAAGGCCGCG TACGTCTGTC GATGAAAGAA GCTCAGCCGA AAGAAGAAGC GGCAAGCGAA
TAA
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| Protein sequence | MNPIVKSFEY GQHTVTLETG VIARQADAAV LASMGDTTVL VTVVGKKAEE PGRDFFPLTV
NYQEKTYAAG KIPGGFFKRE GRPSEGETLT ARLIDRPIRP LFPNGFKNEV QVIITVVSVD
PEISPEVISM IGTSAALSIS GIPFNGPLGS ARVGYVDGEY ILNPTVSQLE NSQLELSVAG
TENAVLMVES EADALPEEVM LGAVVYGHEQ QQVVIQAIKE LKAEVNKPMW DWTAPVQNEE
LVAKVKDLAE AGLTEAYQIV VKQDRYAQVD VVKTAAKEAL LAENPDADAR EIDGLLGSLE
KKVVRSRIIA GNPRIDGREP DMVRALSVMA GVLPRTHGSA LFTRGETQAL VTCTLGTERD
AQKIDSIMGE QTSRFMLHYN FPPYSVGETG MVGSPKRREI GHGKLAWRGI HAVMPTAEEF
PYSIRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKTSV AGIAMGLVKE GDDFVVLSDI
LGDEDHLGDM DFKVAGTRDG VTALQMDIKI EGITKEIMQI ALQQAYGARV HILNVMDQAI
SGHRAEISDH APRITTLKIN PEKIRDVIGK GGATIRALTE ETGTTIELED DGTVKIASAN
GDATKEAIRR IQEITAEVEV GTVYNGKVVR IVDFGAFVTI LPGKDGLVHI SQIAEERVAN
VSDYLEVGQE VKVKVMEVDR QGRVRLSMKE AQPKEEAASE
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