Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2822 |
Symbol | |
ID | 4922492 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3343826 |
End bp | 3345928 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640164417 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_001094947 |
Protein GI | 127513750 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000990055 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000418907 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAATCCAA TCGTAAAGAG TTTTGAATAT GGTCAGCACA CAGTCACGCT AGAGACTGGG GTTATTGCAC GTCAAGCAGA CGCAGCTGTT TTGGCAAGTA TGGGCGATAC AACAGTATTG GTTACTGTTG TTGGCAAGAA AGCTGAAGAG CCAGGTCGTG ACTTTTTCCC GTTAACCGTT AATTACCAGG AAAAAACTTA CGCTGCGGGT AAAATCCCTG GTGGATTCTT CAAGCGTGAA GGTCGTCCAT CTGAAGGCGA GACCCTCACT GCACGTCTGA TTGACCGTCC TATTCGTCCT CTATTCCCTA ATGGTTTTAA GAACGAAGTT CAGGTGATCA TCACTGTGGT TTCTGTTGAT CCAGAAATCA GCCCAGAAGT GATCTCTATG ATCGGTACTT CTGCGGCACT GTCTATCTCA GGCATTCCAT TCAACGGTCC ACTGGGTTCT GCTCGTGTGG GTTATGTCGA TGGCGAGTAC ATCCTCAACC CAACGGTTTC ACAGCTAGAA AACAGCCAGC TGGAACTGTC TGTTGCCGGT ACTGAAAATG CAGTACTTAT GGTTGAGTCT GAAGCCGATG CGCTGCCAGA AGAAGTGATG CTTGGCGCCG TGGTTTACGG TCATGAGCAA CAGCAAGTTG TTATCCAGGC GATCAAAGAG CTAAAGGCCG AAGTTAACAA GCCAATGTGG GACTGGACAG CTCCAGTACA AAATGAAGAG CTGGTTGCTA AGGTTAAAGA TTTGGCCGAA GCGGGTCTAA CCGAAGCGTA CCAGATTGTG GTTAAGCAAG ATCGTTATGC TCAGGTTGAT GTCGTTAAAA CGGCGGCTAA AGAAGCATTG CTGGCTGAAA ACCCAGATGC CGATGCACGC GAAATTGACG GCCTGCTTGG CAGCCTAGAG AAGAAAGTGG TTCGTAGCCG CATCATCGCG GGCAACCCAC GTATCGACGG TCGTGAGCCT GACATGGTTC GTGCTCTGAG CGTGATGGCG GGCGTACTGC CACGTACTCA CGGTAGTGCT CTGTTCACTC GTGGTGAAAC TCAGGCACTG GTGACTTGTA CCTTAGGTAC TGAGCGTGAC GCACAGAAGA TCGACAGCAT CATGGGCGAG CAAACCAGTC GCTTCATGTT GCACTACAAC TTCCCTCCAT ACTCAGTGGG TGAAACCGGT ATGGTTGGCT CGCCTAAGCG TCGTGAAATC GGTCACGGTA AGCTGGCATG GCGTGGTATC CACGCGGTAA TGCCAACGGC TGAAGAGTTC CCATACAGCA TCCGCGTAGT ATCTGAGATC ACCGAATCTA ACGGTTCAAG CTCAATGGCG TCTGTGTGTG GTACTTCACT GGCGCTGATG GATGCCGGTG TGCCAATCAA GACTTCAGTT GCTGGTATCG CCATGGGTCT GGTTAAAGAA GGCGACGATT TCGTTGTACT TTCTGACATT CTGGGCGACG AAGACCACTT GGGTGACATG GACTTCAAAG TGGCTGGTAC CCGTGACGGT GTTACCGCGC TGCAGATGGA TATCAAGATC GAAGGTATCA CCAAAGAGAT CATGCAGATC GCTCTGCAAC AAGCCTACGG TGCTCGCGTA CACATCCTGA ATGTGATGGA CCAGGCTATC TCTGGCCACC GCGCCGAGAT CTCAGATCAC GCGCCGCGTA TCACCACACT GAAGATCAAC CCTGAGAAGA TCCGTGACGT GATCGGTAAA GGCGGTGCGA CTATCCGTGC GCTGACCGAA GAGACTGGCA CCACTATCGA GCTGGAAGAT GACGGTACCG TTAAGATCGC TTCTGCCAAC GGCGATGCGA CCAAAGAAGC TATCCGTCGT ATCCAGGAGA TCACTGCCGA AGTTGAAGTG GGCACTGTCT ACAACGGTAA GGTTGTTCGT ATCGTTGACT TCGGTGCCTT CGTGACTATC CTGCCGGGTA AAGACGGTCT GGTACACATC TCGCAAATCG CCGAGGAGCG TGTTGCCAAC GTTTCTGACT ACCTGGAAGT GGGTCAGGAA GTGAAGGTTA AGGTGATGGA AGTCGATCGC CAAGGCCGCG TACGTCTGTC GATGAAAGAA GCTCAGCCGA AAGAAGAAGC GGCAAGCGAA TAA
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Protein sequence | MNPIVKSFEY GQHTVTLETG VIARQADAAV LASMGDTTVL VTVVGKKAEE PGRDFFPLTV NYQEKTYAAG KIPGGFFKRE GRPSEGETLT ARLIDRPIRP LFPNGFKNEV QVIITVVSVD PEISPEVISM IGTSAALSIS GIPFNGPLGS ARVGYVDGEY ILNPTVSQLE NSQLELSVAG TENAVLMVES EADALPEEVM LGAVVYGHEQ QQVVIQAIKE LKAEVNKPMW DWTAPVQNEE LVAKVKDLAE AGLTEAYQIV VKQDRYAQVD VVKTAAKEAL LAENPDADAR EIDGLLGSLE KKVVRSRIIA GNPRIDGREP DMVRALSVMA GVLPRTHGSA LFTRGETQAL VTCTLGTERD AQKIDSIMGE QTSRFMLHYN FPPYSVGETG MVGSPKRREI GHGKLAWRGI HAVMPTAEEF PYSIRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKTSV AGIAMGLVKE GDDFVVLSDI LGDEDHLGDM DFKVAGTRDG VTALQMDIKI EGITKEIMQI ALQQAYGARV HILNVMDQAI SGHRAEISDH APRITTLKIN PEKIRDVIGK GGATIRALTE ETGTTIELED DGTVKIASAN GDATKEAIRR IQEITAEVEV GTVYNGKVVR IVDFGAFVTI LPGKDGLVHI SQIAEERVAN VSDYLEVGQE VKVKVMEVDR QGRVRLSMKE AQPKEEAASE
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