| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2821 |
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| Symbol | |
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| ID | 4922491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3342798 |
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| End bp | 3343688 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164416 |
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| Product | lipoprotein NlpI |
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| Protein accession | YP_001094946 |
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| Protein GI | 127513749 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0125409 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000291055 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTCATA AATTACGCTC GGTCTCGTTA GCGGTGATGA CCAGCCTAAG TTTGTTACTG
ACAGGATGTG TATCGACTCA ACCGGCGGCG ACGGCGGAGC AGGGCAAGTT GATGGTTGCC
CCGGTTATGC CCGATTATAA GCTCGAGGTG ACCCTCGCCA GATTAAACGA TATCTTGGCC
TCGGCCGAGT TGACCCCAGA GCAGCGTGCG CGCTTTCATT ATGACCGCGG GGTGATCTAC
GACAGCGTCG GGCTACGCAT CCTGAGTCGC ATCGATTTTC ATCAGTCGCT GAAGCTGCAA
CCTAATCTTG CCGATGCCTA TAACTTTATC GGCATCTACT ACACCCAGGA AGGAGAATTC
GAGAGCGCCT ACGAGGCCTT CGACGCCGTG CTAGAGCTGT CACCCGATTA TGACTATGCC
TACCTCAATC GCGGTATCGC TCTCTATTAT GGACAGCGCG ATGAGCTGGC CGTGGCCGAC
ATGCAGTCTT TCTATCAGGC CAATGAGCAA GATGGCTATC GCGCGCTTTG GCTCTATATT
ACCGAGTCGA AACTCGATGG CGAGCAGGCG ATGCAGCATC TCGCCGCCAA TAGAGCCAAG
CTGGATGACT CTCAATGGTC GACTACGTTA GTGGACTTCT ATTTGGGTAA GGAGAGCCGC
GAGCAGGTGT TTGAGGTGGC CAAGCAGGGG CTGAGCCATC CCAACGAGTA TGCCGAGCGC
CTGTGCGAAG CCTACTTTTA TATCGCCAAG ATCGCCGAGA AGCAGGGCAA TTACAGTGAC
GCCGCGAACT ACTTCCGCCT GGCCTTGGCG ACCAACATCT ATGATTTTGT CGAGCACAGG
TATGCCAGGG TCGAACTGGC GAAGATAAAC GAGCTGATTG CTCAGCCCTA G
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| Protein sequence | MTHKLRSVSL AVMTSLSLLL TGCVSTQPAA TAEQGKLMVA PVMPDYKLEV TLARLNDILA
SAELTPEQRA RFHYDRGVIY DSVGLRILSR IDFHQSLKLQ PNLADAYNFI GIYYTQEGEF
ESAYEAFDAV LELSPDYDYA YLNRGIALYY GQRDELAVAD MQSFYQANEQ DGYRALWLYI
TESKLDGEQA MQHLAANRAK LDDSQWSTTL VDFYLGKESR EQVFEVAKQG LSHPNEYAER
LCEAYFYIAK IAEKQGNYSD AANYFRLALA TNIYDFVEHR YARVELAKIN ELIAQP
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