| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2820 |
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| Symbol | prfC |
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| ID | 4922490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3341022 |
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| End bp | 3342602 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164415 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_001094945 |
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| Protein GI | 127513748 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0200081 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000558993 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAGGCT ATACAGTTGA AGTCGACAAG CGTCGTACTT TCGCCATCAT CTCGCACCCG
GATGCGGGTA AAACCACCAT CACCGAGAAG GTCTTGTTGT TCGGACAGGC GTTGCAGAAG
GCGGGCACGG TAAAGGGTAA GAAGTCGGGA CAGCATGCCA AGTCTGACTG GATGGAGATG
GAAAAGGATC GTGGTATCTC GATTACCACC TCTGTAATGC AATTCCCTTA CCGCGAGGCC
TTGGTGAACC TGCTGGATAC TCCAGGTCAC GAAGACTTCT CGGAAGATAC CTATCGTACG
CTGACCGCAG TTGATTCTTG CCTCATGGTG ATCGACTCGG CAAAGGGTGT TGAGCAACGC
ACCATCAAGT TGATGGAAGT CACCCGTCTG CGTGATACGC CGATTGTGAC CTTCATGAAC
AAACTTGACC GCGATATTCG TGATCCTATC GAGTTGATGG ACGAGGTGGA AAACATACTG
AACATCGCCT GTGCGCCAAT TACCTGGCCT ATCGGCGCCG GTAAAGAGTT CAAAGGCGTG
TACCACCTGC TGCGTGATGA GGTGATCCTC TATCAGAACG GCATGGGTCA TACCATCCAG
GACTCTCGCG TCATCAAGGG CTTGGATAAT CCTGAGCTGG ATGAGGCGAT CGGCAGCTAT
GCACAAGACC TGCGCGATGA GATGGAGCTG GTGCTGGGTG CTTCTCATGA ATTTGACCTT
GAGGCCTTCC TCAAGGGCGA GCTAACGCCG GTATTCTTCG GTACCGCGCT GGGTAACTTC
GGTGTCGACC ATATTCTCGA TGGTATCGTC GAGTGGGCGC CGCGTCCTCA GCCGCGCGAG
TCGGATCAGC GTAACGTCGA GCCCGACGAG TCTAAGTTCA GTGGCTTCGT GTTTAAGATC
CAGGCAAACA TGGATCCCAA GCATAGGGAC CGCGTCGCCT TTATGCGTGT ATGTTCAGGC
CGCTATGAGC AAGGCATGAA GATGCATCAC GTGCGTATCG GTAAAGATGT GAACGTCAGC
GATGCGCTTA CCTTTATGGC GGGCGATCGT AACCGCGCCG AGGCAGCCTA TCCTGGTGAC
ATCATAGGTC TGCATAACCA TGGCACCATT CGCATCGGCG ATACCTTCAC CCAAGGCGAG
AAGCTTCGTT TTACCGGTGT GCCTAACTTC GCACCTGAGA TGTTCCGTCG TATCAGGCTG
AAAGATCCGC TCAAGCAGAA GCAACTGCTC AAGGGACTGG TTCAGCTTTC GGAAGAAGGT
GCGGTGCAGG TGTTCCGTCC GCTTGATTCT AACGACCTGA TTGTAGGCGC CGTGGGTGTG
CTGCAGTTTG AAGTGGTTGT GCAGCGTCTT AAGAGCGAAT ACAAGGTTGA GGCTATCTAC
GAGGCGATCA GCGTGGCGAC GGCGCGCTGG GTCTACAGCA AAGATGCCAA GAAGCTGGAG
GAGTTTAAGC GCAAGTGCAG CAACAACCTG GCACTCGATG GTGGCGATAA CCTTACCTAT
GTTGCGCCGA CCATGGTGAA CCTGAATCTG TCGATGGAGC GTTATCCCGA CATCGAGTTC
GCCAAGACCC GAGAAAACTA A
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| Protein sequence | MSGYTVEVDK RRTFAIISHP DAGKTTITEK VLLFGQALQK AGTVKGKKSG QHAKSDWMEM
EKDRGISITT SVMQFPYREA LVNLLDTPGH EDFSEDTYRT LTAVDSCLMV IDSAKGVEQR
TIKLMEVTRL RDTPIVTFMN KLDRDIRDPI ELMDEVENIL NIACAPITWP IGAGKEFKGV
YHLLRDEVIL YQNGMGHTIQ DSRVIKGLDN PELDEAIGSY AQDLRDEMEL VLGASHEFDL
EAFLKGELTP VFFGTALGNF GVDHILDGIV EWAPRPQPRE SDQRNVEPDE SKFSGFVFKI
QANMDPKHRD RVAFMRVCSG RYEQGMKMHH VRIGKDVNVS DALTFMAGDR NRAEAAYPGD
IIGLHNHGTI RIGDTFTQGE KLRFTGVPNF APEMFRRIRL KDPLKQKQLL KGLVQLSEEG
AVQVFRPLDS NDLIVGAVGV LQFEVVVQRL KSEYKVEAIY EAISVATARW VYSKDAKKLE
EFKRKCSNNL ALDGGDNLTY VAPTMVNLNL SMERYPDIEF AKTREN
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