| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2814 |
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| Symbol | deoA |
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| ID | 4922484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3334338 |
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| End bp | 3335669 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164409 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_001094939 |
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| Protein GI | 127513742 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000364581 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000355939 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGTTTCTAG CACAAGAGAT TATTCGTAAA AAACGTAATG GCGAAGTGTT GTCTACCCAA
GAGATCCAAT TTTTCGTTCA GGGGATCACC AACAACACAG TTTCTGAAGG CCAAATCGCT
GCACTGGGTA TGGCGGTCTA TTTCAAAGAC ATGAACATGG ATGAACGTAT TGCGCTGACG
ACAGCCATGC GTGACTCTGG CACCGTCCTT AACTGGAAAA ACCTCGGCCT CGACGGCCCT
ATCATCGACA AGCACAGCAC TGGTGGTGTG GGCGATGTGA TCAGCCTGAT GCTTGGCCCC
ATGGCTGCCG CCTGTGGCGG ATATGTGCCC ATGATCTCCG GCCGTGGCCT GGGTCATACT
GGCGGAACCC TGGATAAGTT CGATGCGATT CCAGGTTACC AGACTGAGCC AGACAGCGAC
CTGTTCAGAA AAGTCGTTAA AGAAGCCGGT GTCGCCATCA TAGGTCAAAC TGGAGACCTG
GTCCCCGCCG ATAAGCGCTT CTATTCTATT CGCGATAATA CCGCAACCGT TGAATCCATC
TCTCTCATCA CAGCTTCTAT TCTTTCTAAG AAACTTGCCG CCGGTCTCGA TGCATTAGCC
ATGGACGTTA AGGTAGGCAG TGGCGCCTTC ATGCCAACTT ATGAAGCCTC TGAAGAGCTG
GCTCGCAGCA TTACCGCGGT AGCCAATGGT GCCGGTACTA AGACGACGGC TCTGCTGACC
GACATGAACC AAGTATTGGC ATCATGTGCC GGTAACGCGG TAGAAGTGAA AGAAGCGGTG
GATTTCCTGA CCGGTGCATA CCGTAATCCA CGCTTGTATG AAGTGACTAT GGGTCTGTGC
GCCGAGATGT TGCAGCTAGG TGGCCTGGCC GCCAGCGAAG CCGATGCCCG TGAGAAACTC
AACCGCGTGC TGGATAACGG TAAGGCTGCC GATATCTTCG GCCGCATGAT TGCCGGCCTG
GGTGGCCCAG CCGACTTTAT CGAAAACTAT GCTAAGTATC TGCCACAGTC GCAGATCATT
CGTCCTGTTT ACGCCGACCG TAGCGGTTTC GCGGCCTCTA TGGATACCCG TGAGCTAGGC
CTTGCGGTAG TAACCCTAGG CGGTGGACGT CGTAAGCCAG GTGATGCCCT AGATTACAGC
GTGGGCTTGA CCCAAGTCTG TGCGCTGGGC GATGAGATCA CCTCAGATAA GCCGATTGCC
ATGGTACATG CGCAATCTGA AAGCGCCTTC GAAGAAGCGG CGGCAGCCGT GAAGAAAGCG
ATTCACATTG GCGATGAAGC GCCAGAGAAA ACACCAGAGA TCTATCGTTA CATTCGTCAG
TCAGATCTCT AG
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| Protein sequence | MFLAQEIIRK KRNGEVLSTQ EIQFFVQGIT NNTVSEGQIA ALGMAVYFKD MNMDERIALT
TAMRDSGTVL NWKNLGLDGP IIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI PGYQTEPDSD LFRKVVKEAG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLAAGLDALA MDVKVGSGAF MPTYEASEEL ARSITAVANG AGTKTTALLT
DMNQVLASCA GNAVEVKEAV DFLTGAYRNP RLYEVTMGLC AEMLQLGGLA ASEADAREKL
NRVLDNGKAA DIFGRMIAGL GGPADFIENY AKYLPQSQII RPVYADRSGF AASMDTRELG
LAVVTLGGGR RKPGDALDYS VGLTQVCALG DEITSDKPIA MVHAQSESAF EEAAAAVKKA
IHIGDEAPEK TPEIYRYIRQ SDL
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