| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2812 |
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| Symbol | deoD |
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| ID | 4922482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3332289 |
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| End bp | 3332999 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640164407 |
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| Product | purine nucleoside phosphorylase |
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| Protein accession | YP_001094937 |
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| Protein GI | 127513740 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0813] Purine-nucleoside phosphorylase |
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| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0651432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000308017 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGCTACAC CACACATTAA TGCAGTCGAC GGTGCATTCG CTGATACAGT GTTATTCCCA
GGCGACCCGC TACGTGCTAA ATACATTGCT GAAACTTTCC TTGAGAACGT TGAGCAAGTC
ACCGACGTAC GTAACATGCT AGGTTTCACA GGTACTTACA AAGGCGTTCG TATTTCTGTT
ATGGGTTCTG GCATGGGTAT CCCTTCTTGC TCTATCTATG CGACTGAGCT GATCAAAGAC
TACGGCGTGA AAAACCTGAT CCGCGTGGGT ACTTGTGGTG CGATCAGCAC AGACGTTAAA
GTACGCGACG TGATCATCGG TATGGGTGCT TGTACCGATT CTCAAGTTAA CCGTCTACGC
TTCAAGGGCC AAGACTTCGC CGCTATCTGT GACTACAGCC TGCTGAGCGC AGTGGTTAAG
GCAGCCGAAG AGAAAGGTAC TAAGTACCGC GTTGGTAACG TATTCTCTGC AGACCTGTTC
TACACGCCTG ATCCAGAAAT GTTCGACGTG ATGGAAAAGA TGGACGTGCT AGGCGTTGAG
ATGGAAGCCG CTGGTCTATA TGGCGTTGCT AAAGAGTTTG GTGCTAAGGC GCTATGTGTG
GTGACAGTAT CTGACCATAT CCGTACCGGT GAAAAGACCT CTTCTGACGA GCGTCAAACC
ACCTTCAACG AGATGATCGA AATGACACTG GAAGCGGCTA TTACTCTGTA A
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| Protein sequence | MATPHINAVD GAFADTVLFP GDPLRAKYIA ETFLENVEQV TDVRNMLGFT GTYKGVRISV
MGSGMGIPSC SIYATELIKD YGVKNLIRVG TCGAISTDVK VRDVIIGMGA CTDSQVNRLR
FKGQDFAAIC DYSLLSAVVK AAEEKGTKYR VGNVFSADLF YTPDPEMFDV MEKMDVLGVE
MEAAGLYGVA KEFGAKALCV VTVSDHIRTG EKTSSDERQT TFNEMIEMTL EAAITL
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