| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2801 |
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| Symbol | |
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| ID | 4922535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3317080 |
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| End bp | 3320205 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640164396 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001094926 |
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| Protein GI | 127513729 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR02956] TMAO reductase sytem sensor TorS |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0225241 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGCGCTT TATCACTCTC GGGGAAAAGT TTAGTCGGTC GTCTCATGCT GGCCTTTAGC
CTGCTGGCGC TGCTCCTGCT CACGCTGGTG AGCCTGGGCA GCGTATCCCT CTACTGGGTG
AAGGCCGCCG ACAAATACCT CTATGAGGAG GCGCTGCCCG CCTCGGAAGC CGCGCGCCAG
TTGATGCAGT CGGTCAGCGC CCTGCAGGAA AATGCCCAGG CCTTAGAGCG GACGCAGGAG
GAGGCGGAGC GCGCCTTTCT CGGGCGCAAG TTATCTATCG AGAGCAGTAA CCTGCTCGGC
GCCATCGCCC GCCTCAAATC GCTTAACCTC CAGGGCGACA GCCACCTCGG CCCCAGAGCG
GCGGAGATCA TCCACGACTT GACTCAGCTA GGCCATCAGG TGGGCGAGCG TCTGGCCCTC
GCCAAGCAGC TCAAGGGCGA TGGTCAGGCG CTGGTGGATG CCTCTGGACG GGCTATCGAG
CTGTTGGAGG CTGAGCTGGC GGTCGTCGAT TCCGCCGTGC TGGCCAAGCT GAGCTTGGCC
TATCCCGAGG TTGCCGGCAC GACTCAGAGC GGCTATCTGC TCGATACCAT CATAGAGAAA
GATCTCGATA TTCAGGCGCG TCTTAATCGC GCCTTGGCCC TCATTCATCA CTTGGCGCTG
GTGGGCCAGC TGCTGCAATC GCCCGAGCAA CATCTGGGGC TCAGTAAGGT GCTGGTGAGT
ATGTCGCGGG TGCTGACCGA GCAGGGCGGC GGCGAGTATC GATTACAGCC AAGCGAGGCC
CAGGGCGGCA TGCCTGGCAA TGAGCCCGCC AGCGCAGCGA GCTATGTTCT TGCAGGCATC
AATCAACCTA ATCTTATGCC GCTGGAACTG CTCAAGGGCG TGGTGCGTGA CCCTGTGCGG
GCCACCGAGC TGGCCCATGA GCTGGCGATA CTGCGCGGCG TCGGCGATAA ACTCGCGCTG
CAGCGCCGCT ATGCCGGGGT GCTCGCCTTG CAGACGGCGC AGCTTCAAAC ACTGAGCGAC
AAGCTGAGTC AGCTCAACAC TCAGGTGGAT GGGGCCATGA CGGCTCAGCA AACCCAGGCG
GAGCAGGCCA GGGGGGATTT TCTTCGCCAG CTCTTCTGGG CCAAGGCGGG GCTCTGGGGC
ACGGGTTTAT TGATGCTGGT GTTGATCCTG CTGGTGGTAT ACCGGGTGAT CTACAAGGGG
ATCGCACTGA GACTGCACGA GGCGACCGAC GCCCTGGCAC GCCTTAGCAA TGGGGATACT
CAGGTGGCGC TGGACCCCCA TGGGGATGAT GAGCTGACCG CCATGGCCTC GGCCATCGAT
GCCTTCAAGC AGAAGACAGA TCATAATCAG CGTCTGCAAT CTGAGCTGCA GGAGACGGCC
TCCGAGTTGT CGGCCCACAA GGCATCGCTG GAGACGACGG TGCAGGAGCG TACCCAAGAG
CTGGCCCAGG CCAATCGCCG CCTGGATGCC GAGGTGCAGG GCCATGCCCA GGCGAGACAG
ATGGCCGAGG CGGCCGACAA GGCCAAGTCG CTCTTCCTGG CGACCATGAG CCATGAGATC
CGCACCCCCC TCAACGGCCT GCTCGGCACC CTGACTCTGC TGGGGGAATC TGAGCTGCCC
ACGGCCCAGA AGCAGATGCT GGCCCTATCC CAGTACAGCG GCGCCCTGCT GCAGACGGTA
CTGAACGATA TCTTAGACTT CTCTCGCCTG GAGCAGGGCA AGCTGAGTAA TGAGCCGCGC
CCTGTGGCCA TCAACGAGCT GCTCGACGAG GTGGTCTCCA TCATGCTCGC CGGGGCGGGC
AACGCCGGCC TGTCGCTGCG TCTGGAGCGA GAGCGTCTCC CCGAGTGGAT CAACATCGAT
GGCCCCAAGC TGCGCCAGGT GCTGTTTAAT CTGCTGGGCA ATGCCATCAA ATTTACCCCG
GCTGGGGAGA TCTGCCTGCG GGTGAGCCAA GCAGGGGCTC GCCTTAAGTT TACCGTGAGC
GATACTGGCC TTGGGATCCC CGAAGATGCC AAGGCCCGTC TGTTTATCGC CTATAGCGCC
CAGCCCAATC AGGGACGCAG CCGTGGCACT GGCCTAGGAC TGGCGATCAG CAAGGAGCTG
GTCACCCTGA TGGGGGCCGG CGATGAGGGG CTCTGGGTCG AGACCGAGGT GAACAAGGGC
AGCACCTTCG GCTTTAGCCT GCCTTTGGAG GCATGTGAGG CGCCCGTGTT AAGCGCTACC
GATATCATCC CTCAGGTCGC GCCAAAAAGA GTGCTGGTGG TGGAGGATAA TCAGGTCAAT
GTCATGGTGG CCCAGGGCTT CCTGGCGCAC CTTGGCCACG AGGTGGTTTT GGCGCCAAGC
TGCGCCGAGG CCATGGCGGT TTTCGAGGAT AAAGACGCGG GTTTTGATGC CGTGATGTTG
GATATTCAGC TCAGCGATGG CTCGGGCATA GATCTCCTGA GTCAGCTCCG TGAGTGCGCC
GCGAGTGATG TGCTGTTTGC CGCCTTCACC GCCCAGCTAC AGCCACAGGA TCTCGAAGTT
TATCGAGCGG TAGGATTCGA TGAGATCTTG GCCAAGCCGC TCAACATGCA GGCCCTGATG
CGCTGGTTAG GGCGGGCGTC AAAAACATCG GCTCCTGTCG CCGAAGAAGC CGAAGACGTC
AAAGAGAAAG AAGCAGCAGA GCGAGTCGAA TCTGATGAAA CGTCGGCGGA GGTTTTAGCG
GAGGAAAATT CTCTGCCGGA TGATCCTCTG CTGAATGACC CTCTGCTGGA TGCTCCTCTG
TTGGACAGCG CCCAGTTTCA GGGGGATTTT GACTGTCTCG GCGAGGCGGC CATGGTGCAG
ATGTTGAGCC TCTATTTGTC CTCCAGCGAG GCGCAGCTGA CCGAGTTGGA GCAGCTTGTC
GAATCCACGC CTGAGCAGAA AGCTGAACAG GAAGCCGAAC AGGCCGCCGA GGATAAGAAT
GAGGCGTGTC GTAAGCTGCT CCACGGTCTC AAGGGCAGCA GCGCCAACAT GGGCATGGTC
AGGCTGACAA GGCGTTGCCA ACAGCTGGAA AAAAGCGAGC TGCAGGCGAC TGATATTTGC
GGGCTCAGGC AGCTGTGGCG TGACTCGGTC GCCGACTTCG AGGCACAGCT AGCATTAACG
CAATAG
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| Protein sequence | MGALSLSGKS LVGRLMLAFS LLALLLLTLV SLGSVSLYWV KAADKYLYEE ALPASEAARQ
LMQSVSALQE NAQALERTQE EAERAFLGRK LSIESSNLLG AIARLKSLNL QGDSHLGPRA
AEIIHDLTQL GHQVGERLAL AKQLKGDGQA LVDASGRAIE LLEAELAVVD SAVLAKLSLA
YPEVAGTTQS GYLLDTIIEK DLDIQARLNR ALALIHHLAL VGQLLQSPEQ HLGLSKVLVS
MSRVLTEQGG GEYRLQPSEA QGGMPGNEPA SAASYVLAGI NQPNLMPLEL LKGVVRDPVR
ATELAHELAI LRGVGDKLAL QRRYAGVLAL QTAQLQTLSD KLSQLNTQVD GAMTAQQTQA
EQARGDFLRQ LFWAKAGLWG TGLLMLVLIL LVVYRVIYKG IALRLHEATD ALARLSNGDT
QVALDPHGDD ELTAMASAID AFKQKTDHNQ RLQSELQETA SELSAHKASL ETTVQERTQE
LAQANRRLDA EVQGHAQARQ MAEAADKAKS LFLATMSHEI RTPLNGLLGT LTLLGESELP
TAQKQMLALS QYSGALLQTV LNDILDFSRL EQGKLSNEPR PVAINELLDE VVSIMLAGAG
NAGLSLRLER ERLPEWINID GPKLRQVLFN LLGNAIKFTP AGEICLRVSQ AGARLKFTVS
DTGLGIPEDA KARLFIAYSA QPNQGRSRGT GLGLAISKEL VTLMGAGDEG LWVETEVNKG
STFGFSLPLE ACEAPVLSAT DIIPQVAPKR VLVVEDNQVN VMVAQGFLAH LGHEVVLAPS
CAEAMAVFED KDAGFDAVML DIQLSDGSGI DLLSQLRECA ASDVLFAAFT AQLQPQDLEV
YRAVGFDEIL AKPLNMQALM RWLGRASKTS APVAEEAEDV KEKEAAERVE SDETSAEVLA
EENSLPDDPL LNDPLLDAPL LDSAQFQGDF DCLGEAAMVQ MLSLYLSSSE AQLTELEQLV
ESTPEQKAEQ EAEQAAEDKN EACRKLLHGL KGSSANMGMV RLTRRCQQLE KSELQATDIC
GLRQLWRDSV ADFEAQLALT Q
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