| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2791 |
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| Symbol | |
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| ID | 4922725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3301398 |
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| End bp | 3305078 |
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| Gene Length | 3681 bp |
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| Protein Length | 1226 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164386 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001094916 |
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| Protein GI | 127513719 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3292] Predicted periplasmic ligand-binding sensor domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.544858 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAGCAC TCATTCTCTC ACTCCTGCTA TTGCTACTGG TGAGCCAGCC CAGCCTAGCC
TTCAGCTATC AGCCGCAGTT TGATTCCTTC GGCGCCAAGG AGGGGCTGTC GATGAACACG
GTCACAGATA TCGTCAACGA CAAGGAGGGA CATCTGTGGA TCGCCACCCA GGCCGGGCTC
AACCGCTACG ATGGTAAGCG TTTCAAGATC TTCGACACCC AGGGGGATAA TCGCGGCCCC
TCGGCCAAAT ATATCAAGAA GCTGCATTTC AGCCGCAGTA CCCTCTGGCT AATCACCCGC
AACGAAGGGA TCAACCGCTA TCATGCCGAC AGCAGCATCT TCGAGCCCTT CAACGCCAGT
AACAGCCCGC TGCCCGACGA TATCGTCGAT CTCGATGAAG ATGCCCAGGG TAACCTATGG
ATCGCCACCG CCGACAATCG CCTGCTCTAC TTCTCCCCCG CCAGCAACAA GCTGCTGGCG
ACCCTGGACA GCAGCACGAC CCAGGGACTG CCCAGCGGGC GCATCAACAC CCTGTATCGC
GACCGGCAGG ATAGGCTCTG GATAGGCACG CTCAACGGTC TCGCCAGCCT CAAGCAGACA
GAAGATGAGA TTAGCGTCAC CCAATACGCG CCAGAGGTGC TGCGCGGCGT CTCCGCCATC
GAGGCGGGTA AGAGCAACAC CCTCTGGGTC GGCACCCAGA CCCGCGGCCT GTTCCTGCTG
GATATCACCA ATGATCAGGC CATGGCGATC GCCGCCGTGC CCGCCAGCCC CGCCTTCTCC
ATCTCAGCCC TCAGGCGGGA TAAGTTCGGC AGCCTCTGGA TAGGCTTTCG CGCCCAGGGA
CTGGCCAGAT ATGAGCCTAG CCGCAACGAG ATCCACAGGC TCAACGCCTC CGCCGAGAAC
CGCTACAGCA TCAACAGCCC AGTCATCACC TCCTTGTGGA TAGACAACGA GCAGCAGCTG
TGGATCGGCA GCAAGGGCGG CGGCCTGAGT AAGACCTTTC TCGACGCCCA ATATTTCGGT
CATATCCATG GTTTTAGCTT CAACGACAAT AACCTGCTCA ACGTGGACAT TCGCAGCCTG
CTGGAGGACA GCCAGGGCAC CCTCTGGGTC GGCACCGCCA GCGGCGTCTA CCGGGGGCTG
AAAAATCCCA GGGGCGAGCT GACGGGCTTC ATCCCCTTCC ATGTGCAAAA CCCCGCCCTG
AGTCAGGCCT TCATCAGCTT CATCAAGGAG GATGAGCTAG GTCAGCTGTG GATCGGCACC
CGGGGCGATG GCCTCTTCAT CTATACCGCC GACAAGCAGA GCTATATTCA CTATCTGGCC
GATGCCAAGA GCCCCAACAG CCTCCCCAGC AATCAGCTCT ATTCGCTCTA TTTCGACAGG
CAGGGGACCC CCTGGATCAC CAGCAGCGAT GGTGGCATCG CCAGATATGC CGGCATAGCC
ACAGGCTTTA TCGCCGTGCC TCTGCCCATC AAGACGGTCA CCGACATGCT GCAGGACGGC
GACGGCAACT ACTGGCTCAC CTCCTCCAGC GACGGCCTGC TGAGGCTCGC GGCCAATGGC
GAGATCACTC ACTTCGCCAG CCACACGCCC CATGCCTTGC CCAAGCAACA CCTCTTCTCC
ATAGTGGCGG GAGACAAACA CAGCCTGTGG ATCGCCAGCA ACGAGGGGCT ACTGCACTTC
AATACCCAAG ACTTCAGCAG CCGACTGCTT ACCACGGCAG ATGGCCTGAT CGACGACACC
ATCTATTTGC TGTTTGCCGA CCAGCGCCGT CACCTCTGGC TCGGCACCAC CAAGGGGCTA
ACCCAACTCG ACCCGGACAG CCTGAAGACC ACCAACTACA CAGATATCGA CGGCATACAA
GATAACGAGT TCAACTTCGG CGCCGCGGCG CTTGGGCGTA ACAACACCCT CTATCTTGGC
GGCGTCAACG GCTTTAACCA TTTCAATCCG GCCCAGCTGC CCCGCCGTCA GCCGCCGACC
CTACCGGTGA TCACAGATCT CTTTGTGCTG GGTCAGGCCC AAGGGCTACC CGACATGGAC
CAGGGCACGC CAAGACTGCC CCCTTCGCTG GCGCTGCCCC ATACCGCCGA TATCTTCTCG
CTGCACTACC ACAGCCCGGA TCTGCACAAC GCCACCCGGC TCAGCTATCA GTACCGCCTG
CTCGGGCTCA ACGACACCTG GATAGCGGGC TCGCCGGAGC AGGTCGCCTA CTTTACCGGC
CTCAACCCGG GCAACTATCT GTTTGAGATC CGCGCCAAGG ATATCAACCA GCAATACAGC
CCCATCAGGC GCCTCAAGAT CATGCTCGAA CCTGCCCCAT GGCAGTCCCC CTTCGCCTAC
ACCTTGTACT TCACCCTGAC CCTGATGCTG GTAAGCCTGA TCTTCTATCG CAAGTGGTCC
CAGTATCAGC AACAGGCCGC CCTGCTGCAC GAGGTGGCCG AGAGCGAGCA GCGCCTGCAG
CTGGCCCTGT GGGGCAGCGG CGATGAGTTT TGGGACTGGA ATATCGTTCA TGGCAATGCA
ACCCGTACCA ACACCTTCCT CAAGTATCCC GAGCAGGAAC AGGAGCTGAA GAAGACCATA
GCCACCTGTG TCCACCCGGA CGACATCCCC AAGGTGTCAC GGGTCGCCAA GGAGTGCATC
AACGACCAGA TAGATAAGTT CTCCCTCACC TATCGCGGCC TGGCGCCCGA CGGCGAGTGG
CTCTGGGTGC TCAATCGTGG TCAGGTGGTA GAGCGTGACG AGGCGGGCAA GGCGGTACGC
ATCGCGGGGA CCATCAAGAA CATTCAGCAG CAGAAAGAGA CGGAGCACGC CCTGCGCGAG
CTCAATCAGC GTCTGGAGCA GCGCGTCAAC GAGCGCACCC TTGAGCTGCA ACAGCGCAAC
GACGAGCTGA AACACACCCT GGATGAGCTG GAACATACCC AGGGCGAGTT GATGGACAAG
GAGAAGATGG CGGCCCTTGG CGGCCTGGTG GCCAGCATCA CTCACGAGGT CAATACTCCC
ATAGGGATCA GCGTCACCGC CGCCTCCCAC CTGCAGGAGA GCGTCAAACA CTTCGACCAG
CTCTATCGCC GCGGCGAGAT CACCGAAGAG GATTTCGAGC AGTATCAGAA TGAAGTGGCC
GAGTGCTGCC GACTGATCCT GGCCAATCTG GAGCGCGCCT CTAAGCTTAT CGCCAGCTTC
AAACAGGTCT CTGTGGATCA GTCCCACGAA GATGTACGCG AGTTCGACCT GCATGCCTAC
CTGGAGGAGA TCTTCATCTC CCTCAACCCC ATGCTGTCAC GCACGCCCCA TGAGTACAGC
TATCAATGTC CGGAGAAGCT GATCATCCAG AGCACCCCGG GGGCCTTCTA CCAGATCGTC
AGTAACCTGT TCAACAACTC GGTGATCCAC GCCTACCCCG ACGGCAAATC TGGCAAGCTC
AGCCTAGACG TCGCTCGAAC CGACCAGGGG ATCTGCATCA CCTATCAGGA CGATGGTTGC
GGCATGTCCC AGGAGGTTCA GGCCCAGGTG TTCCAGCCCT TCTTCACCAC CAAGCGCGGC
AAGGGCGGCA GCGGCCTGGG GATGAATATC GTCTCCAACA TAGTCACTCA GGTCCTCAAG
GGCGAGATCA GCATAGACTC CCAGGAGGGG CGCGGCAGCA CCTTCATCAT ACATTTGCCC
GACAGCCTGA TCGTTCGCTA G
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| Protein sequence | MRALILSLLL LLLVSQPSLA FSYQPQFDSF GAKEGLSMNT VTDIVNDKEG HLWIATQAGL
NRYDGKRFKI FDTQGDNRGP SAKYIKKLHF SRSTLWLITR NEGINRYHAD SSIFEPFNAS
NSPLPDDIVD LDEDAQGNLW IATADNRLLY FSPASNKLLA TLDSSTTQGL PSGRINTLYR
DRQDRLWIGT LNGLASLKQT EDEISVTQYA PEVLRGVSAI EAGKSNTLWV GTQTRGLFLL
DITNDQAMAI AAVPASPAFS ISALRRDKFG SLWIGFRAQG LARYEPSRNE IHRLNASAEN
RYSINSPVIT SLWIDNEQQL WIGSKGGGLS KTFLDAQYFG HIHGFSFNDN NLLNVDIRSL
LEDSQGTLWV GTASGVYRGL KNPRGELTGF IPFHVQNPAL SQAFISFIKE DELGQLWIGT
RGDGLFIYTA DKQSYIHYLA DAKSPNSLPS NQLYSLYFDR QGTPWITSSD GGIARYAGIA
TGFIAVPLPI KTVTDMLQDG DGNYWLTSSS DGLLRLAANG EITHFASHTP HALPKQHLFS
IVAGDKHSLW IASNEGLLHF NTQDFSSRLL TTADGLIDDT IYLLFADQRR HLWLGTTKGL
TQLDPDSLKT TNYTDIDGIQ DNEFNFGAAA LGRNNTLYLG GVNGFNHFNP AQLPRRQPPT
LPVITDLFVL GQAQGLPDMD QGTPRLPPSL ALPHTADIFS LHYHSPDLHN ATRLSYQYRL
LGLNDTWIAG SPEQVAYFTG LNPGNYLFEI RAKDINQQYS PIRRLKIMLE PAPWQSPFAY
TLYFTLTLML VSLIFYRKWS QYQQQAALLH EVAESEQRLQ LALWGSGDEF WDWNIVHGNA
TRTNTFLKYP EQEQELKKTI ATCVHPDDIP KVSRVAKECI NDQIDKFSLT YRGLAPDGEW
LWVLNRGQVV ERDEAGKAVR IAGTIKNIQQ QKETEHALRE LNQRLEQRVN ERTLELQQRN
DELKHTLDEL EHTQGELMDK EKMAALGGLV ASITHEVNTP IGISVTAASH LQESVKHFDQ
LYRRGEITEE DFEQYQNEVA ECCRLILANL ERASKLIASF KQVSVDQSHE DVREFDLHAY
LEEIFISLNP MLSRTPHEYS YQCPEKLIIQ STPGAFYQIV SNLFNNSVIH AYPDGKSGKL
SLDVARTDQG ICITYQDDGC GMSQEVQAQV FQPFFTTKRG KGGSGLGMNI VSNIVTQVLK
GEISIDSQEG RGSTFIIHLP DSLIVR
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