| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2781 |
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| Symbol | |
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| ID | 4922745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3289458 |
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| End bp | 3290954 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164376 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001094906 |
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| Protein GI | 127513709 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGGCAA CTGAGCTGAT TTGGTTAATA GTCTATCTGA TAGCAATCGG CATCGCTGGT
ATCATCTACT GGTACTGGCA TAGGCGCACT GAGCTTAAGT TTCTTAAGCG TCTGGTGACC
CAGTTAAGTC AGCAACATAA GGTGCGCCAG CCCCTGAATA TTGCCACCAT TCCCTACCGT
TTTATCCCCC TCTATGTGCA GCTGCAACAC CTGCTGAAAC AACTTCCGCC CCCAAAGGGT
CGCGACAAGC TGACCGGGCT GCTCAATCGC GTCGGCCTCA AGGCTAAGTT GACCTGCAAG
ATGCCTCTCA CCCATGGGAT GTTTGTGCTT ATCGATATTC ACCGCTTTCG CTATGTGAAT
GATCTCTTTG GTTTCTCCCT GGGGGATAAG CTGCTGCAGG CCTTGGCGGA GCGCTTGGAG
CGACGAATCG GCGATAAGGA CATGCTGGCG CGGATGAATG AAGATGAGTT TCTGATCTAC
TTTAATACCC CCATGAGCGA GGCGGAGCTT ATGGTGTTTC AGCAGGGACT GGCGCAGCCC
ATCAGCATCA AGGGAACCGT GATCAATTTG CAGTTGCAAC TTGGCTATCT TGAGCTGTCA
TTGCACCACG CCGATGTTAG CCAGATGCTG CGCCGCCTGG ATCTGGCATT GGTGCGGGCC
AAGTCGGCCA GCAACTATAT CGCCGCCTAT CAGGAAGGGG ACGATCGAAG TCAGCACAGG
CAGTTGACCA TAGTCAGCTG TTTCCCCAAG GCGCTGGAGC AAAACGAGCT CTATCTGGTG
TTTCAGCCCA AATATAACCT TGCCACAGGC AACTGCACCC ACGCCGAGGC CCTGATCCGC
TGGGACAGCT CTGTGCTTGG GCCTGTCTCG CCGGGTGAGT TTATCCCGCT TTTAGAGTGC
GCCGGGATGA TCAGCCTGCT CAGCCAGTGG GTGATCGATC AGGTGTTGTT GCAGCAGGTG
CGTTGGCAGG AGAGTGATAT TCGCCTGGAG CTGGCGATCA ACCTGGCGAT TGACGATCTG
AGCGAGAAGC AGCTGAGTGA GCGGATCATC ACCCGCCTGA AGCAACATGG CCTCAGTGCT
CAGGTGCTGT CTATCGAGAT CACCGAGAGC CAGCTGATGA CAGACATGGT GCGCACCGTG
GCCGTGCTCA ATCGCCTCAA GCGCGCCGGC GTCAAGGTGG CCATAGACGA TTTTGGTACC
GGTCACTCCT CGCTAGCCTA TCTCAAACAC CTGCCGGTGG ACGAAGTTAA GATAGACAGA
GCTTTCCTGA CCGGGCTGGA GTCGGATCCT CGGGCGCAGC ATATCGTTCG CAGCGCCGTC
GACCTGGCCA AGGGACTAGA CTTTTCGGTG ACCGTCGAGG GTGTCGAGCA GATGCCGGTA
TTTAAGCTGC TTCAGCAGAT GGGGGTCGAT AAGGTGCAGG GGGATATTTA CGCCAAACCG
ATGCGGGCGC CAGAGCTTGA GATGCACTGG CGCAAGTTAA ATCGGCCGCT CCTCTAG
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| Protein sequence | MTATELIWLI VYLIAIGIAG IIYWYWHRRT ELKFLKRLVT QLSQQHKVRQ PLNIATIPYR
FIPLYVQLQH LLKQLPPPKG RDKLTGLLNR VGLKAKLTCK MPLTHGMFVL IDIHRFRYVN
DLFGFSLGDK LLQALAERLE RRIGDKDMLA RMNEDEFLIY FNTPMSEAEL MVFQQGLAQP
ISIKGTVINL QLQLGYLELS LHHADVSQML RRLDLALVRA KSASNYIAAY QEGDDRSQHR
QLTIVSCFPK ALEQNELYLV FQPKYNLATG NCTHAEALIR WDSSVLGPVS PGEFIPLLEC
AGMISLLSQW VIDQVLLQQV RWQESDIRLE LAINLAIDDL SEKQLSERII TRLKQHGLSA
QVLSIEITES QLMTDMVRTV AVLNRLKRAG VKVAIDDFGT GHSSLAYLKH LPVDEVKIDR
AFLTGLESDP RAQHIVRSAV DLAKGLDFSV TVEGVEQMPV FKLLQQMGVD KVQGDIYAKP
MRAPELEMHW RKLNRPLL
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