| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2778 |
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| Symbol | |
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| ID | 4922742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3284738 |
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| End bp | 3287770 |
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| Gene Length | 3033 bp |
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| Protein Length | 1010 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164373 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001094903 |
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| Protein GI | 127513706 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAAG ATACATTATT TTCGCTCTCT CAAAATGCCG CGCTCTTGTT GATCATGGTA
TTTATCTACG ACGCGGTGCC ACGGCACCAT CGTAGCGAGT ATTTTCTGTT GTGGCGCCTC
ATCATGGGGG CTGTGATAGG CGGCGTGACA GTACTGACCA TGATGACTTC CTGGGAATAT
CAGCCCGGGG TCTTTATCGA TACCCGCTCT GTAGTGTTGG CCATCAGTGG GCTCTTCTTC
GGCGGCCTGC CCACCTTCGT CGCCGCTTCT GTTGCCTGTG CCTATCGCCT GTTCCAGGGG
GGCGATGGCA TGCTGGTCGG GGTGACAGTG ATTCTGGTCT CCGCCCTGTT TGGTAGCCTG
TGGCGCTACT ATCGCAAGAC CACCATCGCC GATCTCAGCT TTATCGAGTT GTATCTGTTT
GGTTTCCTGC TGCATTTCTC GACCCTGTCG CTGCTGTTTA TTCTGCCCTT TTCCATGTTT
GTCGATCTCC TGGTGCAGAT CGCCCTGCCT GTGATGTTGA TTTTTCCCAT AGTGACGGCC
CTGCTGGGCA TGATGCTGGC CAGGCGGCTT GAGGTGGAGC GGGACGCTAA GATCCAGCTT
CAGGATGACT TTATTTTTCG CTCGCAATTT AACGTCGGCA ACATGGGGAT AGCCATCACC
TCGGTCGATC AGCATTGGAT CAAGGTCAAT CCTCGTCTGT GTAAGATGCT CAAATATTCC
GAGACAGAGC TGCTCAACCG CACCTGGACC GAGCTGACCT ATTTCGAAGA TCTTAAGGCG
GATATGACCC AGTTCCAGCG CATGTTAAAG GGGGAGATAG ATGCTTACGA GATGGATAAG
CGCTTCGTCG CCAAGGATGG GGAGATTGTC TATACCCACC TGACGGTGGC CTGTCGCCGC
AACCATAACA TGGTGGATAT GGTGATCGCC GGCCTTATCG ACATTACTGA GCATAAGCGG
GCTGATATGG CGATGCGCAC CAGTCAGGAG CGATTGGCCT TGGTGCTGGA GAGCAGCGAT
CTTGGCATGT GGGACTGGGA TATCAAGAGT AACGAGACCA AGCGTAATCC CTGGTGTGCC
AAGGTGCTGG GCTGCGACCT CGAAAGACTT AATCGCGACA GCCGCATCTG GATCGATGCC
ATTCATCCCC AGGACAGGAT GGCGGTGCTT AACTCCATCG ATCGCCATCT CAAGGGGGAG
ACCCAGAAAC ATTACATCGA ATACCGGCTG ATTAGCCTCA GCGGCGAAGA GCATTGGATC
TTGGATACCG GCAAGGTGGT GAGCCGCGAC CGTAATGGCC TGCCGACCCG CATGTGCGGT
GTGCACTCGG ACATTACCGA GCAGAAGAAG GTGCAGGAGT CGCTGGAGCT GGCGGCCTCT
GTGTATAACA ACTCCAGCGA AGCCATGAGC GTACAGGATC ACAAGGGGCA TATCATCACC
ATCAACGCCG CCTTCACCGC GATTACGGGG TACAGCCAGG AGGAGGCGCT GACGCAAAAC
ATCCGTATAT TGCAGAGTTC CCGCACCCCG AGAAGCCAAT ACGATGAGAT GAACAGCGCC
ATTCGCGATA CCGGCTATTG GCAGGGGGAG CTGTGGATCA AGAACAAGAG CGGCGAGGAG
TATATGGTCT GGTTGACCAT CAATACCATC TTCGACCAGC ACGGCCAGGT GTATCGCAGG
GTGGCGCTCT TCTCCGACAT TACCGAGAAG AAAGAGGCTG AGCATATCAT CTGGAAACAG
GCCAACTATG ACCCCCTGAC CGGCCTGCCT AATCGCCGCA TGTTGCTGGA GTATCTCAAT
ACCGAGATAT TGCGTATCGA CCGTAACCAT AGCCACTTTG CCCTGATGTT CCTGGATCTG
GACTTCTTCA AGGAGGTTAA CGATACCCTG GGCCATGATA TGGGAGATCT CTTGTTGCAG
GAGACCGCCA AGCGGCTCAA GGGCTGCATC CGTGAGTCGG ATGTGGTGGC GCGCCTGGGG
GGCGATGAAT TTACCGTAGT GCTCTCGGGG ATCGACTCCC CCAGCGGTGT CGAGCGGGTG
GCCCAGAGCA TACTGGAGCG CATCGCCGAG CCCTACAGCC TGGGGGATGA GACCGCCTAC
ATCAGCGCCA GTATCGGTAT CACCATCTAT CCTGACGATG CCACCAGTAT CGAGGGGCTG
CTGAAACATG CGGATCAGGC GATGTACGCC GCCAAGGAAC AGGGGCGCAA CCGTTTCCAT
TACTTTACCC CCTCGATGCA GGAGTACGCC CGCTATCGCA TGGCGCTGAT CAAAGATCTG
CGTAACGCCA TCAATCGCAA GGAGTTTGAG CTCTTCTACC AGCCTATTGT CGACATGAAC
AAACTGGGGG TCTACAAGGC GGAGGCGCTG ATCCGCTGGG TGCATCCCCA ACGGGGACTC
GTCTCGCCGG GTGAGTTTAT TCCAGTGGCG GAAGAGACAG GGCTTATCAA CGAGATAGGT
AACTGGGTAT TTGAGAAGGC GGCTCAGCAG AGCGCTCGCT GGCGAACTCA ACATGGCGTC
GAGATCCAGA TCAGCATCAA CAAGTCGCCA ATTCAGTTCA GGGACGAGGG GGACACCTTC
AGCGACTGGC TGGCGCTGCT ACGCCATCTG GAGCTCTCCA GCAACGCCAT CTGCGTCGAG
ATCACCGAAG GTCTGCTGCT GGATGCCTCC ATGGGGGTGA CCGACAAGCT GCTGGCCTAT
CGCGATGCCG GTATTCAGGT GTCTCTGGAT GACTTCGGCA CCGGCTATTC GTCGCTGGCC
TATCTGAAGA AGTTCGACAT AGATTATCTC AAGATCGATC AGTCCTTTAC TCGTAATCTT
GAATCCGACA GTGACGGCGT GGCCCTGTGT GAGGCGATCA TAGTGATGGC CCATAAGTTG
GGGATCAAGG TGATCGCAGA AGGGGTGGAG ACCCAGTTCC AGCACGATAT CCTGGCTAGC
GCCGGATGTG ATTTTGCCCA GGGCTATCTC TACTCCAAGC CTGTCTCCCT ACCGGAGTTT
GAGCGCCTCT ATGTTAACCC CGAGGCGCGC TAG
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| Protein sequence | MNQDTLFSLS QNAALLLIMV FIYDAVPRHH RSEYFLLWRL IMGAVIGGVT VLTMMTSWEY
QPGVFIDTRS VVLAISGLFF GGLPTFVAAS VACAYRLFQG GDGMLVGVTV ILVSALFGSL
WRYYRKTTIA DLSFIELYLF GFLLHFSTLS LLFILPFSMF VDLLVQIALP VMLIFPIVTA
LLGMMLARRL EVERDAKIQL QDDFIFRSQF NVGNMGIAIT SVDQHWIKVN PRLCKMLKYS
ETELLNRTWT ELTYFEDLKA DMTQFQRMLK GEIDAYEMDK RFVAKDGEIV YTHLTVACRR
NHNMVDMVIA GLIDITEHKR ADMAMRTSQE RLALVLESSD LGMWDWDIKS NETKRNPWCA
KVLGCDLERL NRDSRIWIDA IHPQDRMAVL NSIDRHLKGE TQKHYIEYRL ISLSGEEHWI
LDTGKVVSRD RNGLPTRMCG VHSDITEQKK VQESLELAAS VYNNSSEAMS VQDHKGHIIT
INAAFTAITG YSQEEALTQN IRILQSSRTP RSQYDEMNSA IRDTGYWQGE LWIKNKSGEE
YMVWLTINTI FDQHGQVYRR VALFSDITEK KEAEHIIWKQ ANYDPLTGLP NRRMLLEYLN
TEILRIDRNH SHFALMFLDL DFFKEVNDTL GHDMGDLLLQ ETAKRLKGCI RESDVVARLG
GDEFTVVLSG IDSPSGVERV AQSILERIAE PYSLGDETAY ISASIGITIY PDDATSIEGL
LKHADQAMYA AKEQGRNRFH YFTPSMQEYA RYRMALIKDL RNAINRKEFE LFYQPIVDMN
KLGVYKAEAL IRWVHPQRGL VSPGEFIPVA EETGLINEIG NWVFEKAAQQ SARWRTQHGV
EIQISINKSP IQFRDEGDTF SDWLALLRHL ELSSNAICVE ITEGLLLDAS MGVTDKLLAY
RDAGIQVSLD DFGTGYSSLA YLKKFDIDYL KIDQSFTRNL ESDSDGVALC EAIIVMAHKL
GIKVIAEGVE TQFQHDILAS AGCDFAQGYL YSKPVSLPEF ERLYVNPEAR
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