| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2771 |
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| Symbol | |
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| ID | 4922735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3275766 |
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| End bp | 3277634 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164366 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001094896 |
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| Protein GI | 127513699 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00248212 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.949391 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTGG ATATTACGAA ATACCCTGTG CTGGCACAGG CCGACACCCC AGATGAATTA
AGACAGCTTC CCCAGGGTGT GCTACCAAAA CTTGCTGACG AACTCAGAAG TTATCTCCTA
CAGTCCGTAG GCATCTCCAG TGGCCACTTC GCTTCTGGCC TGGGCACGGT CGAGCTGACG
GTAGCCCTGC ACTATGTCTA CAACACTCCG TTCGATCGCC TGATCTGGGA CGTGGGCCAC
CAGGCCTATC CCCATAAGAT CCTCACGGGT CGTCGAGACA AGATGCCGAC CATACGCCAA
AAAGGCGGCA TTCACCCCTT CCCTTGGCGG GAAGAGAGCG AATATGACAC CTTCAGCGTG
GGTCACTCAG GCACCTCTAT CAGCGCGGCG CTGGCCATGG CTGTTGCCGC CGAGAAGGAA
CAGGCAGGCC GTAAGGTGGT GGCAGTCATC GGCGACGGCG CCATGACGGG CGGCATGGTA
TTTGAAGCCA TGAACCACGC CGGCGATCTG CATAACGACA TGCTGGTCGT GCTCAATGAC
AACGAGATGT CGATCTCCGA GAATGTCGGC GCGCTGAATA ACCACCTGGC GCAGCTGATG
TCGGGCCGTC TCTACACCAC CATTCGCGAA AACAGCAAGA AGGTGCTCAA GGGGATGCCC
GTCATCAAGG AGATGGCCAA GCGCACCGAG GAGCATCTCA AGGGCATGGT CGTCCCCGGC
ACCATGTTTG AGGAGCTGGG CTTTAACTAT ATCGGCCCTA TCGATGGCCA TGATGTCGAC
GCCCTGGTTG AGACCCTGCG CAACATGCGT AACCTCTCGG GCCCGCAAAT TCTGCACATC
ATGACCAAGA AGGGACGCGG CTACGAGCCA GCGGAGAAAG ATCCCATCGG CTGGCACGCC
GTGCCTAAGT TCGATCCTTC AACCTTTGCT AAGCCAGCCG CAAAACCGGC TAACCCCACC
TTCTCTCAGG TGTTTGGTCG CTGGCTGTGC GACATGGCTC AGAAGGATGA CAAGGTACTG
GGGATCACCC CGGCCATGCG TGAAGGCTCA GGCATGGTGG AGTTCTCCCA GCGCTTCCCG
AATCAGTATT TCGATGCAGC CATCGCCGAG CAGCATGCGG TGACACTCGC CGCCGGCTTC
GCCTGTGAAG GCTACAAGCC TGTACTGGCG ATCTACTCCA CCTTCCTGCA ACGCGGCTAT
GATCAGCTGA TCCACGACGT GGCGCTACAG AAATTGCCGG TGATCTTCGC CATCGACCGC
GGCGGTATCG TCGGCCCAGA CGGCCCGACC CACCAGGGCG CCTTCGATCT TAGCTATATG
CGCGCCATTC CTAACATGGT GATCATGGCG CCGTCGGATG AGAACGAATG TCGTCAGATG
CTCTACACAG GCTACTGTTA CAACGAGGGA CCGACGGCGA TCCGTTACCC AAGAGGCAGC
GCCACCGGCG AGCCTCAGGT CGAGACCATG ACCGCCTATG AGATTGGCAA GGGCCTGATC
AAGCGCGAAG GCAAGAAGAT CGCCATCCTT AACTTCGGTA CTACACTGGC GTCGGCGAGC
CAGGCGGCCG AGGCGCTCGA TGCCACCCTG GCCGACATGC GCTTCGTTAA GCCGCTGGAT
GTGGAGCTGG TGAAACAGCT GGCCACCAGC CATGATCTGC TGGTGACTGT GGAAGAGAAC
GCCATCATGG GCGGTGCAGG CTCGGGCGTA CTCGAACTGC TACAACAGCT TAAGCTGCCT
ATGCCTGTGC TCAATATCGG CCTGCCCGAT GAGTTTATTA AACATGGCGA GTGCGGTGAG
ATCCTGGCCG AGCTACAGCT GGATGGCCCG GGCATAGAAG CGCAGATCCG CGCCTATCTG
GCGGACTAA
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| Protein sequence | MSLDITKYPV LAQADTPDEL RQLPQGVLPK LADELRSYLL QSVGISSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDKMPTIRQ KGGIHPFPWR EESEYDTFSV
GHSGTSISAA LAMAVAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLVVLND
NEMSISENVG ALNNHLAQLM SGRLYTTIRE NSKKVLKGMP VIKEMAKRTE EHLKGMVVPG
TMFEELGFNY IGPIDGHDVD ALVETLRNMR NLSGPQILHI MTKKGRGYEP AEKDPIGWHA
VPKFDPSTFA KPAAKPANPT FSQVFGRWLC DMAQKDDKVL GITPAMREGS GMVEFSQRFP
NQYFDAAIAE QHAVTLAAGF ACEGYKPVLA IYSTFLQRGY DQLIHDVALQ KLPVIFAIDR
GGIVGPDGPT HQGAFDLSYM RAIPNMVIMA PSDENECRQM LYTGYCYNEG PTAIRYPRGS
ATGEPQVETM TAYEIGKGLI KREGKKIAIL NFGTTLASAS QAAEALDATL ADMRFVKPLD
VELVKQLATS HDLLVTVEEN AIMGGAGSGV LELLQQLKLP MPVLNIGLPD EFIKHGECGE
ILAELQLDGP GIEAQIRAYL AD
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