| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2754 |
|---|
| Symbol | |
|---|
| ID | 4922749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3257518 |
|---|
| End bp | 3259074 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640164349 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001094879 |
|---|
| Protein GI | 127513682 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0153453 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACG CTATGACAAG CCTCTCCCAG GTATCGCTCC TTCAGCAGAA ACTCCATTCT
GCCAAAATCG CCTTGGCCGA ACTCAACGAT CAGAAGGCCC AGAGCCAGAG CTCACTGCTG
CAATTTATCG GTCATCTCAG CCTCGCCTGC AAGGGTCAGA GCATAGAGCT GGACAACAAG
TTGGCCAAGC TGCGCCACAA CCTGATCAAC GTCGAACATA TCGACGAAGT CTTGCCGGAT
CTGCTCGAGG TCGAGCAGCT ACTCAAGCAG CAGTACCACC ATGTGATGGG GCAGCTCGAA
GATGGCCGCG CCAGCCTCGC CAAGGTGATC CGTCAGCTAC AGCGTGTGGA CTCGGTACCG
GACAAACTCA AGAAAGAGAT CGCCTACTAT AAACAAGATC TCGGCAAGCC GTTTCATACT
TATTGGGATT ACTTTCCTAA GGTAGAACGT CTGGTGGGCT TTTTCGAAGC CATCATGCAT
GAGCAGCTCA GCCAGGGCGA CAAGCTAGAG GTTCTGCCGA AACACAGGCA GCTGGCCCAC
GAGCTGGCAC AGATGATCTC TGAGATCGAG TTTCGTAAGG ATCAGCGCGA TCAGGTATTA
GTGATCAAAG ATTACCTGGC CGCCGAGATA GATGTCGACG GTCTAATCGA CGCCTATCAA
ACAATACTCT CACTGCTGCT GGAAAATATT GCGCTGGAGA AGAGCGCCTC TCAGGAGTTC
CTCTACGCCC TTAACGATGC CCTCTCAGCG GTGCGTGAGG TGGTGAATGA CTCCTACAAC
AGCAACCAGC GCAGCTATCA GCTGAAGAAG CAGCTCAACC GTGAGATCAA CTCGCGGGTC
GACAATGTAG GCGATGCCAT CATAGACATC GACGACATAG ACCACCTCAA GCTGCAGGTC
ACTGAGCAAT TAGCCTCTAT CCGAACCGCC CTCGGGCGCA AGGAGGCGCT GGAGCAGCGC
GAACAGGCGA TGCTGCGCAA GTCGATGGAG ACGATGCGCG ACGAGCTCAA CGAGCTAAGT
AAAGAGGCCA ACGCCTATAA AGAGCGTCTG TTCGAGCAGC AGAAACTCAA CCTGCTCGAC
ACCCTGACCC AGCTGCCCAA TCGCGCGGCG CTGGAAGAGC GTATGGAGCA GGAGTTCCGC
AACTATCAAC GCCATCGTCA TCCGCTATGG GTGGCGGTTG CCGACATAGA TCACTTCAAA
TCCATCAACG ATAACTTCGG CCACAGCACC GGGGATAAGA CGCTTCAGGT GATCGCCATG
GCACTGAAAA ACTCCCTGCG TGAATCTGAG TTTGTGGCTC GTTACGGCGG TGAAGAATTT
GTCCTCCTCA TTCCGGATGT GTCGGCCAAC GACATAGAGC AGCTGTTGAA TCGCGTGAGG
GAGAAAGTAA AAAATATTCC CTTTAAGTTT AAAAATCAGA GAATTACGGT TACAGTATCA
ATAGGTGCTG CACAAATTCT TGAAAACGAG CAGATAAGCG AAACCTTCGA ACGCGCCGAC
GCAGCACTCT ACAAGGCCAA ACATGAAAGC AGAGACAGAG TGATTATTGA CGCCTAA
|
|---|
| Protein sequence | MKDAMTSLSQ VSLLQQKLHS AKIALAELND QKAQSQSSLL QFIGHLSLAC KGQSIELDNK
LAKLRHNLIN VEHIDEVLPD LLEVEQLLKQ QYHHVMGQLE DGRASLAKVI RQLQRVDSVP
DKLKKEIAYY KQDLGKPFHT YWDYFPKVER LVGFFEAIMH EQLSQGDKLE VLPKHRQLAH
ELAQMISEIE FRKDQRDQVL VIKDYLAAEI DVDGLIDAYQ TILSLLLENI ALEKSASQEF
LYALNDALSA VREVVNDSYN SNQRSYQLKK QLNREINSRV DNVGDAIIDI DDIDHLKLQV
TEQLASIRTA LGRKEALEQR EQAMLRKSME TMRDELNELS KEANAYKERL FEQQKLNLLD
TLTQLPNRAA LEERMEQEFR NYQRHRHPLW VAVADIDHFK SINDNFGHST GDKTLQVIAM
ALKNSLRESE FVARYGGEEF VLLIPDVSAN DIEQLLNRVR EKVKNIPFKF KNQRITVTVS
IGAAQILENE QISETFERAD AALYKAKHES RDRVIIDA
|
|---|
| |