| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2752 |
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| Symbol | |
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| ID | 4922919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3253246 |
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| End bp | 3255042 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164347 |
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| Product | peptidase M61 domain-containing protein |
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| Protein accession | YP_001094877 |
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| Protein GI | 127513680 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.733625 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000408122 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAACTAG CTGTACCCTT GATTTTGATT TTTAGTCCTT TTTTCCTGTC TCAAGCTCAC
GCAGATGTTA ATTACCGGAT CGATCTCACC CAGCCTCAGC ATCACCTGGC CAAGGTGGAG
GTCGATTTTC CCCGCAGCGA GGCCAAGCAG CTTAGTGTGA ATCTACCCGT GTGGCGCACC
GGCAAGTATC AGGTGTTGCC CCTGGGGGAT GCGATCCGCC ACTTTAGGGC CGAAGATGAG
TCAGGCAGGG CGCTAGCGTG GCAACGCAGC GCCAGCGGCG AATGGCAGGT GAAACTGAGC
CAGCCGACTC AGGTCAAGGT CACCTATCAG CTGTATGCCA ACAGCCTAGG GCAGAGGGTG
AGTCATATCG ATGCCTCCCA TGCCTATTTG GATGCCAGCG GTGTATTTGT CTATAGCCCA
GATTTTCGCG ATCAAAAAGT AAATGTCTCG CTAAAAGTGC CTGAGGCCTG GCGTAGCTAT
TCGGGCATGG AATCAAAGGA TGCCCATCTA TTTATTGCGG ACAATTATGA TGTGCTGGTG
GACTCGCCCA TAGAGACGGG GATCAGTCAG CACAGAGCCT TCTCGGCAGA CGGCCGCGAC
TACGAACTAG TGGTCTGGGG GGAGGGTAAC TATGATCTCG ATAAGATGGT GGAAGACCTT
ACCAAGCTTA GCGGCCAGGC CAAGGCGATT TGGTCAGGCT ACCCCTTTAA GCGCTATGTC
TATATGGTGC ACGCCACCAG TGGTGCCAGC GGCGCGACCG AGCACCTGAA CTCAACGGTT
ATCCAGCGCC CCCGCTTTAG CTTTCGTGAG CGCAAAGATT ACCTCGGCTT TATCAAGACG
GCTTCCCACG AGTTTATTCA TACCTGGAAC GTGAAGGCCT ACCGCCCTCA GGGGCTGGTG
CCCTACGATT ATCAGCAGGA GGGGATCACC GAGCTCTTGT GGATCGCCGA AGGCTCGACC
AGCTATTTTC AGAGTCAGCT TTTGTTGCGC GCCGGTGTGA TCACGCCTAA GGAGTTCCTG
GAAGATCTGG CCAGGCGTAT CACGCGCAAC GAGCAGACGC CGGGGCGCGA GGTGCAGTCT
GTCGCCGAGG CCAGTGCCGG TCAGTGGGTG GCCGGTGGCG GCGATTATGC CCAGAACCAC
AGCAGTAACA TCTATGCCGA AGGCTACCTG ACCTCACTGG CACTGGACTT TAGCCTGCTG
AGTGACACCC GACTCAAGAC CTCCTATCGG GATCTGCATG CCAAACTATA TCAAGATTTT
AAGCTTCCGG TTGGGTACCA AGTTAGCGAT GTGCAGCAGA TTCTGCGTGA GCTGTCGGGC
AAAGATTATG GCGACTGGTG GCAGCGTCAT GTCAACAGCC CGCTGGTGCT GGACTATGAG
GCCTTGCTGG CCAAGGCGGG ACTGAAGAAA GATTATGGCA GTGATAATAA GGCGATCGCC
TATGCCGGCA TGCAGACTCG TGAAGGTAGT TTAAGACTCA GCCATGTTAA ACGTGAGGGG
CCAGCCTGGC GGGCAGGCAT AGTAGCTGGC GATGAGCTGG TGGCGATAAA TGGCCTTAAG
GTCACCGCCG AAGGCTTTGC GGCGCGCATC AAAGACTTTA CCCCGGGTGA TACCATCAAG
GTGACGCTCT TTAGCAACGA TACCCTAAAA GAGGTGGCGC TGACGCTGGC GGAGCAGCCC
AGTGAGAAGC TTAAGCTCGT TAGCGTCGAT AAGCCGAGCC GGAAACAGAA AGCCTTCTTC
AAGGCCTGGC TGGGAATTGA TTGGCCTTTC GATGGCGAAG GTAAGCTGAA AAAATAA
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| Protein sequence | MKLAVPLILI FSPFFLSQAH ADVNYRIDLT QPQHHLAKVE VDFPRSEAKQ LSVNLPVWRT
GKYQVLPLGD AIRHFRAEDE SGRALAWQRS ASGEWQVKLS QPTQVKVTYQ LYANSLGQRV
SHIDASHAYL DASGVFVYSP DFRDQKVNVS LKVPEAWRSY SGMESKDAHL FIADNYDVLV
DSPIETGISQ HRAFSADGRD YELVVWGEGN YDLDKMVEDL TKLSGQAKAI WSGYPFKRYV
YMVHATSGAS GATEHLNSTV IQRPRFSFRE RKDYLGFIKT ASHEFIHTWN VKAYRPQGLV
PYDYQQEGIT ELLWIAEGST SYFQSQLLLR AGVITPKEFL EDLARRITRN EQTPGREVQS
VAEASAGQWV AGGGDYAQNH SSNIYAEGYL TSLALDFSLL SDTRLKTSYR DLHAKLYQDF
KLPVGYQVSD VQQILRELSG KDYGDWWQRH VNSPLVLDYE ALLAKAGLKK DYGSDNKAIA
YAGMQTREGS LRLSHVKREG PAWRAGIVAG DELVAINGLK VTAEGFAARI KDFTPGDTIK
VTLFSNDTLK EVALTLAEQP SEKLKLVSVD KPSRKQKAFF KAWLGIDWPF DGEGKLKK
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