| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2739 |
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| Symbol | |
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| ID | 4922935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3235811 |
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| End bp | 3237238 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164334 |
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| Product | Fmu (Sun) domain-containing protein |
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| Protein accession | YP_001094864 |
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| Protein GI | 127513667 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.438417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000842018 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGCGACT CCACAACTTC GGCAACCACC TCCAGCAAGG CTCCTCTGGC GGTCGCCAGC
ATTGGCAGCG AGCAGCTTCA TCAGGCGCTA AACGCCCAGA GCGGCGCCGA GAAACGCGCC
CTGAGTTACA GCCTGACCAT TCACCAGCTG TTTTGTCAGA CGCTGCAGAG TAAGCTGCCG
GGGGACCGCA TCCTGGCCGA CTATTTTCGC GCCCATAAGA AACATGGCTC CAAAGACAGG
CGAGTGATCC GCGAAACCCT GTTTGGCCTG TTTCGCTGGC ATGGCTGGCT CAAGTTAATC
CCGTTAAAGG ACGACAGCCA GCAGGCGATC ACCCAGCAGT GGTTTGCCCA GCTGGCCATG
ACCGCCGCCC TGGAGGCTCA TCCCTGGCTG GATATCGTCT CGGCCTGGCG CGGGTTTGCC
GAACTCGATG AGCCAGCAAT AAATGCTCAT ACAGACTCTG GCTCAGACAC TGACGCTCTT
AAGTTCAAGC AGGCCATACT AGAAGCCGCT TTCCCAGCTC AAGTCTTCCC CTTGACCGCA
CTGGCGCCGG ACTGGTTCTG GGCCCATTTC GACCAAGACC TTGAGATACA AGAGCGCTTA
GTAAGCAGCC TGAGCAGCCG CCCACCTATC TGGGGTCGTC TGCAGGGGAT CTCCCTGGCT
AAGGCCAAGG CCAAGTTGGC ACAGCAAGAG ATAGAGGCAA GCGGCAGCGA CTACTTCAAA
GATGCCATCA ACCTTGGCCA TAAGAGCATC AACCTCAACG CCGTGGCACT CTATAACGAA
GGCAAGCTGG AGATCCAGGA TCTCGGCTCT CAGGTGATAG GCAATATCTG CGCGCCCAAG
GCCGATGAAA CTTGGTGGGA CGCCTGTAGC GGCGCCGGTG GTAAGAGTCT GCAGCTGCGC
TCGCTCATGT TGCAGCAAGA TAGCGAGGCC AGCGGCAGCG TGGTCGCCTC TGACATTCGC
CGTAAACCGC TCGAAGAACT CACAAAGCGT GCCAAGCGCG CCGGTTTTAG TCAGATCAGC
ACCCAGCCCT GGCAGTCGGA TGCCTTGCCG GTTGCCGCCG GTTATTTCGA CGGCGTGCTG
GTCGATGCCC CCTGTAGCTG CACCGGCACC TGGCGACGCA ACCCGGATAT GCGCTGGCTG
GATGACGCCA GTGCAATCAC AGACAAGGCG AGCCTGCAGC TGGATATATT AAGCCGTGCC
TGTGAGGCGG TAAGACCCGG CGGCGTCCTG GTCTACGCCA CCTGCTCTAT CAGCCCGGTA
GAAAACCAAG AGGTGGTCGA AGCCTTCCTG GCCAAACGAC CCGACTTCAG CCTGCAGACA
CTGACCCATC CTTTCACCAA TGAGGTCACA CAGATGCTGA CGGTACTGCC CTATCAGGCT
GATAGCGACG GCATGTTTGT CGCTAAGATG ATCCGCCAGG GCGAATAG
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| Protein sequence | MGDSTTSATT SSKAPLAVAS IGSEQLHQAL NAQSGAEKRA LSYSLTIHQL FCQTLQSKLP
GDRILADYFR AHKKHGSKDR RVIRETLFGL FRWHGWLKLI PLKDDSQQAI TQQWFAQLAM
TAALEAHPWL DIVSAWRGFA ELDEPAINAH TDSGSDTDAL KFKQAILEAA FPAQVFPLTA
LAPDWFWAHF DQDLEIQERL VSSLSSRPPI WGRLQGISLA KAKAKLAQQE IEASGSDYFK
DAINLGHKSI NLNAVALYNE GKLEIQDLGS QVIGNICAPK ADETWWDACS GAGGKSLQLR
SLMLQQDSEA SGSVVASDIR RKPLEELTKR AKRAGFSQIS TQPWQSDALP VAAGYFDGVL
VDAPCSCTGT WRRNPDMRWL DDASAITDKA SLQLDILSRA CEAVRPGGVL VYATCSISPV
ENQEVVEAFL AKRPDFSLQT LTHPFTNEVT QMLTVLPYQA DSDGMFVAKM IRQGE
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