| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2709 |
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| Symbol | |
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| ID | 4922994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3205171 |
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| End bp | 3206541 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164304 |
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| Product | Na(+)-translocating NADH-quinone reductase subunit A |
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| Protein accession | YP_001094834 |
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| Protein GI | 127513637 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1726] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA |
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| TIGRFAM ID | [TIGR01936] NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000704045 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTTTGCGA TGGCAGGTTT TCCAGACAAG ATTAAGACGA TAAAGAAGGG CCTAGATGTG
CCTATCGCCG GCGAGCCGAG GCAAGAGATA GATTGCTGCG CTCGTCCTGC AAAGGTAGCA
CTGCTGGGTG AAGAGTATGT TGGCCTAAAA CCCACCCTCT TGGTGGAGGT CGGCGATCGA
GTGAAGAAGG GTCAGACTCT GTTCGAAGAC AAGAAGGCGC CGGGCATAGG TTTTACCGCG
CCGGCCAGTG GTGTGGTCGT CGAGATCAAC CGCGGCGAGC GTCGTGTGTT GCAGTCTGTG
GTGATCCAGG TCGAGGGCGA TGAGCAAGTC ACCTTTAAGG CCTATTCGGA TCTGAGCCGC
CTGAGCCGTG AAGCCGTACA GCAAAACCTG GCCGAGAGTG GTCTGTGGAC TGCACTGCGC
ACTCGCCCCT TCTCGCGTGT GCCCTTGCTC GATAGCGAAC CTGCCGCCAT CTTCGTCAAC
GCCATGGACA CCAACCCGCT GGCGGCCGAT CCCCGCGTGA TTATCGCAGA GCAGCGCGAG
GCCTTTGCTG CCGGACTTGA GGTACTGACT TATCTCACCT CTGGCAAGAT CCACCTGTGT
CACGATGCCG GCGAGGCATT GCCTGGCGCC GACCTCGCGC GTGTCGAGAG CCATCGTTTT
GCCGGTGTGC ATCCCGCTGG CCTGGTGGGC ACCCATATTC ACTTTATCGC GCCTGCCAGC
CTGGAACGCC CAGTATGGCA CCTTGGCTAT CAGGATGTGA TCGCTTACGG CAAGCTGTTC
CTGACAGGTG AGCTCTACAC AGATCGCGTG GTGGCCCTGG GTGGCCCGAC GGCGCTCAAT
CCAAGACTGC TGCGCACTCA GCTGGGCGCT CAGCTCAGCA CCCTGGTAGA GGGTGAGATC
AAGCCAGGCA GCAACCGTGT GGTGTCAGGC TCTGTACTGG CTGGCCATAC TGCCTTTGGC
GTTCACGACT ATCTGGGCCG TTTCCATCAG CAGATCTCTG TGCTGGCGGA AGACGCCAAG
CATCAGCTAC TGCCATGGGT GCGCGGCGGC GCAGACAAGT TCTCTATCAC CCGCGCCGTG
ACCTCTCGCT TCAAGGCGAC CAAGCGTCTG TTCGACCTGA CCACTCACGC CGGTGGTTCA
CACCGCGCCA TGATGGCCTT CGGTCAGCTG GATCGCGTGA TGCCGCTGGA TATCCTGCCG
ACCCTTTTGG TGCGTGACCT CGTGGTGCGT GACACTGATG AGGCGCAGGC CCTGGGGGCC
CTAGAGCTGG ATGAAGAAGA TCTGGCCCTG TGTACTTTTG TCTGTCCGGG CAAGTATGAC
TTCGGACGGG AACTTCGCAT CTGCCTAGAT ATTATTGAGA GGGAAGGTTA A
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| Protein sequence | MFAMAGFPDK IKTIKKGLDV PIAGEPRQEI DCCARPAKVA LLGEEYVGLK PTLLVEVGDR
VKKGQTLFED KKAPGIGFTA PASGVVVEIN RGERRVLQSV VIQVEGDEQV TFKAYSDLSR
LSREAVQQNL AESGLWTALR TRPFSRVPLL DSEPAAIFVN AMDTNPLAAD PRVIIAEQRE
AFAAGLEVLT YLTSGKIHLC HDAGEALPGA DLARVESHRF AGVHPAGLVG THIHFIAPAS
LERPVWHLGY QDVIAYGKLF LTGELYTDRV VALGGPTALN PRLLRTQLGA QLSTLVEGEI
KPGSNRVVSG SVLAGHTAFG VHDYLGRFHQ QISVLAEDAK HQLLPWVRGG ADKFSITRAV
TSRFKATKRL FDLTTHAGGS HRAMMAFGQL DRVMPLDILP TLLVRDLVVR DTDEAQALGA
LELDEEDLAL CTFVCPGKYD FGRELRICLD IIEREG
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