Gene Shew_2679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2679 
Symbol 
ID4923132 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3171890 
End bp3173182 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content57% 
IMG OID640164274 
ProductFAD dependent oxidoreductase 
Protein accessionYP_001094804 
Protein GI127513607 
COG category[C] Energy production and conversion 
COG ID[COG0644] Dehydrogenases (flavoproteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.678719 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGAAG AAGCATTTGA CGCGATCATC GTTGGCGCCG GGCTCGCAGG CTGCGTCGCC 
GCCTATGTCT TGGCCAAAGA GGGCGCCGAT GTATTGGTGA TCGAGCGCGG TAACTACGCC
GGCAGCAAAA ACATGACCGG CGGCCGCCTC TACGCCCATA GTCTGGAAAG GATCATCCCA
GGCTTTGCCA AGGAGGCTCC CATAGAACGC AAGGTCACTA AGGAGAAGGT CACCTTCTTG
ACGGATGATA CCGGCGTCAC CCTGGATTAC CACAACGGCC GCGATCAGAG CCCGCTGCAG
GAGTCTTACA CCCTGCTTAG GGGCGAGTTT GACCAGTGGC TCATGGGCAA GGCCGAAGAG
GTGGGCGCTC AGTTCATCAC AGGGATCCGA GTGGACGAGA TCCTCACCCA GGATGGCAAG
GTTATCGGTG TTAAGGCCGA CGGCGATGAG CTTACCGCCA AGGCGGTGAT CTTGGCCGAA
GGGGTCAACC CCATTTTGGG CGAACAGCTA GGCATGGTGA AGCCTAAGGT AAGCGCCGAT
GCTATGGCGG TCGGTGCCAA GGAGCTAATC GAGCTCCCCG AGTCGGTGAT CAAAGACAGA
TTTAACCTCA AGGATGACGA AGGCGCCGCC TGGCTATTTG CCGGCTCCCC CTCCAATGGC
CTGATGGGTG GCGGCTTTAT CTATACCAAC CGCAATAGCA TCTCCCTAGG CATAGTGTGT
GGCCTGCATG GCATAGGTGA GTCGGATAAG AGCGTGCCAC AGATGCTGGA AGACTTTAAG
AATCACTCGC TCATCAAGCC TCTCATCGAA GGTGGCAAGC TACTGGAATA TTCAGGCCAT
GTAGTGCCCG AGGCGGGTCT CAACATGGTG CCTAAGCTGG TTGACCATGG CGTGCTGATC
ACCGGCGATG CTGCGGGATT CTGCCTAAAC GTCGGTTACA CGGTTCGCGG CATGGATCTC
GCCATCGCCT CTGGAGAGGC TGCGGCCAAG GCAGTACTCG CGGCGCGCGC CCAGCAAGAC
TTCTCAGCCC AGGGGCTGAG CAGCTACCAG AGCCTGCTGG AAGAGAGCTT CCTGATGAAG
GACATGAAGC TGTACAAGCA GCTCCCCGCC TTCATGGAGA CGCCGCGCAT CTTCAATCAG
TATCCAAAGA TGGTGGCCGA CATCATGCAC GAGATGTTCA TCATAGACGG AACCCCTGCG
CAGCCACTAC GCAAGACGTT GCTGAAACAC TGCAAAGAGG TGGGTTTCAT GAACCTAATC
AAAGATGGTT ATAAAGGAGT CACATCAATA TGA
 
Protein sequence
MSEEAFDAII VGAGLAGCVA AYVLAKEGAD VLVIERGNYA GSKNMTGGRL YAHSLERIIP 
GFAKEAPIER KVTKEKVTFL TDDTGVTLDY HNGRDQSPLQ ESYTLLRGEF DQWLMGKAEE
VGAQFITGIR VDEILTQDGK VIGVKADGDE LTAKAVILAE GVNPILGEQL GMVKPKVSAD
AMAVGAKELI ELPESVIKDR FNLKDDEGAA WLFAGSPSNG LMGGGFIYTN RNSISLGIVC
GLHGIGESDK SVPQMLEDFK NHSLIKPLIE GGKLLEYSGH VVPEAGLNMV PKLVDHGVLI
TGDAAGFCLN VGYTVRGMDL AIASGEAAAK AVLAARAQQD FSAQGLSSYQ SLLEESFLMK
DMKLYKQLPA FMETPRIFNQ YPKMVADIMH EMFIIDGTPA QPLRKTLLKH CKEVGFMNLI
KDGYKGVTSI