| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2676 |
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| Symbol | |
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| ID | 4923129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3167643 |
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| End bp | 3169187 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164271 |
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| Product | L-carnitine/gamma-butyrobetaine antiporter |
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| Protein accession | YP_001094801 |
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| Protein GI | 127513604 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAAA AAACCATGGG ATTTGATCTC GCAGAAGGGA AAAAGAAGAA GGTGACGATT
GAACCTAAAA TCTTTTTCCC TTCTCTGATT GCCGTGATAT TGCTCTCTTA CTTGACCGTA
AGAGATCTCG ATGCGGCCAA TGTTGTTATC AAGGAAGTAT TTCATTATCT GACCCACTCT
TGGGGATGGG CATTTGAGTG GTACATGATT GCCCTGGCCA TAGGTTGGGG TTGGCTGGTA
TGGGGACCCT ATGCCAACAA CCGTCTGGGT CAGGAAAAAC CTGAGTTCAG CACAGGAAGC
TGGATCTTCT TGATGTTCGC CTCCTGTACC TCCGCCGCCG TGCTCTACTG GGGCTCGTTA
GAGGCATACT ACTATCTGAC CTACCCGCCA TTCGAAATTC AGTCGATGTC GGTACAGGCC
AAGGAGCTTG GTGTGGCCTA TAGTCTCTTC CACTGGGGCC CCTTGCCTTG GATGGGATAT
GGCTTCTTTA CCGTCGCCTT AGGTTACTTC CTGTTTGTGA AGAAGATGGA CGTGGTTCGC
CCCAGCGGTA CCCTGGCCCC CGTGCTAGGT AAGCATCACA AGGGGATCCT CGGCACATTC
ATCGACAACA TCTATGTGGT AGCACTAATC CTTGCCATGG GCACTAGCCT TGGTTTGGCG
ACGCCGCTGG TGACCGAATG TATTCAGTGG TTGTTCGGCA TTGAGCGCAC CATAGAAGTG
GATACCTTCG TGATCTCTGT GTGGATCATC TTCAACGCCG TGTGTGTGGC CTTCGGCCTG
ACTAAGGGCA TCAAGATCGC CAGTGACCTG CGCAGCTACC TGAGCATCAT CATGCTGTTC
TGGGTGTTCC TGATCGGTGC GACCAGCTTT ACCGTTAACT ACTTCACCGA GTCCGTCGGT
GTGATGCTGG CTTACCTGCC ACGCATGCTG TTCTACACCA GCTCAATCAG CGCCGACAGC
TGGCCACAAG ACTGGACCGT ATTCTACTGG GCCTGGTGGG TCGTGTATGG CATCCAGATG
TGTATCTTCC TGGCTAAGAT CTCTCGTGGC CGCACAGTGC GTGAGCTGTG TCTGACCATG
GTATTGGGTC TTACCGCTTC TACCTGGTTC CTGTGGACCA TCCTCGGTAG TAACACTGTG
AACCTGATGC ACGAAAGCAT CATCAACATG GGCCAGTTGA TCCAAGATCA TGGGGCGCCA
CGCGCCATCA TCGAGACCTG GGCTGCCTTG CCGATGAGCA CTATCACCAT GTGGGGCTTC
TTCATCCTCT GTTTCCTCGC CACAGTGACT CTGATCAACG CCTGTTCTTA CACACTCGCT
ATGTCGACCT GTAAGGGCGC CGACGCCGAC AACGAGCCAC CTGTGTGGAT CCGTGTGGGT
TGGTCTGTGT TGGTGGGGGT GATCGGTATC GTGTTGCTGT CACTTGGTGG GTTGAAACCC
CTGCAAACCG CCATCATTGC CGGCGGGGCG CCGCTGGTGA TCGTCAACAT CCTGGTGATC
ATCTCTTTCT TGAAAGATGC ACGTAAAAAC AATTGGGCTT CTTAG
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| Protein sequence | MNEKTMGFDL AEGKKKKVTI EPKIFFPSLI AVILLSYLTV RDLDAANVVI KEVFHYLTHS
WGWAFEWYMI ALAIGWGWLV WGPYANNRLG QEKPEFSTGS WIFLMFASCT SAAVLYWGSL
EAYYYLTYPP FEIQSMSVQA KELGVAYSLF HWGPLPWMGY GFFTVALGYF LFVKKMDVVR
PSGTLAPVLG KHHKGILGTF IDNIYVVALI LAMGTSLGLA TPLVTECIQW LFGIERTIEV
DTFVISVWII FNAVCVAFGL TKGIKIASDL RSYLSIIMLF WVFLIGATSF TVNYFTESVG
VMLAYLPRML FYTSSISADS WPQDWTVFYW AWWVVYGIQM CIFLAKISRG RTVRELCLTM
VLGLTASTWF LWTILGSNTV NLMHESIINM GQLIQDHGAP RAIIETWAAL PMSTITMWGF
FILCFLATVT LINACSYTLA MSTCKGADAD NEPPVWIRVG WSVLVGVIGI VLLSLGGLKP
LQTAIIAGGA PLVIVNILVI ISFLKDARKN NWAS
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