| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2635 |
|---|
| Symbol | rpsB |
|---|
| ID | 4923897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3109668 |
|---|
| End bp | 3110396 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640164229 |
|---|
| Product | 30S ribosomal protein S2 |
|---|
| Protein accession | YP_001094760 |
|---|
| Protein GI | 127513563 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0052] Ribosomal protein S2 |
|---|
| TIGRFAM ID | [TIGR01011] ribosomal protein S2, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000253973 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.214401 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTACAG TTTCAATGCG CGACATGCTT CAGGCCGGTG TTCACTTCGG TCACCAAACT
CGTTACTGGA ACCCTAAGAT GAAGCCTTTC ATCTTCGGCG CTCGTAACGG TGTACACATC
ATTAACCTAG AGCACACTGT GCCTATGTTC AATGAAGCAC TAGCGTTCAT CAGCAACGTA
GCATCTAAGA AAGGTAAAGT ACTTTTCGTT GGTACTAAGC GCGCTGCAAG CGAAGCGATC
AAAGAAGCTG CTATTTCTTG TGATCAATAC TACGTTGACA ACCGTTGGTT GGGCGGCATG
CTGACTAACT GGAAAACAGT TCGTCAATCA ATCAAGCGTC TAAAAGATCT TGAGAGCCAG
TCTGTAGACG GTACTTTCGA CAAGCTGACC AAGAAAGAAG CGCTAATGCG TACTCGTGAG
CTTGAGAAGC TAGAAAAGTC TCTTGGTGGT ATCAAGAACA TGGGCGGCCT ACCTGACGTT
ATCTTCGTTA TCGGTGCTGA CCATGAGCAT ATCGCTATTA AAGAAGCTAA CAACCTAGGT
ATCCCAGTTG TTGCTGTTGT TGATACTAAC TCTTCTCCAG ACGGCATCAA CTACATCGTT
CCTGGTAACG ATGACGCTAT GCGTGCAATT CGTCTGTATG CTGAGTCAGT AGCAGCGGCT
GCTAAAGCAG GTCGTGGTCA AGACCTAGCG GTACAAGCTG AGCAAGACGG TTTCGTAGAA
GCTGAATAA
|
|---|
| Protein sequence | MTTVSMRDML QAGVHFGHQT RYWNPKMKPF IFGARNGVHI INLEHTVPMF NEALAFISNV
ASKKGKVLFV GTKRAASEAI KEAAISCDQY YVDNRWLGGM LTNWKTVRQS IKRLKDLESQ
SVDGTFDKLT KKEALMRTRE LEKLEKSLGG IKNMGGLPDV IFVIGADHEH IAIKEANNLG
IPVVAVVDTN SSPDGINYIV PGNDDAMRAI RLYAESVAAA AKAGRGQDLA VQAEQDGFVE
AE
|
|---|
| |