| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2629 |
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| Symbol | |
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| ID | 4923891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3104289 |
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| End bp | 3105476 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164223 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_001094754 |
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| Protein GI | 127513557 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00703999 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.772306 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAAAA TGGTGATTCT AGGCGCCACA GGTTCTATCG GCGCCAGTAC CCTGAGCGTT
ATCGAGCAAA ATCCTGAGGC CTACAAGGCC TTTGCCCTGG TCGCCCATAA GAGTGTCGAT
AAGATGCTCG ACTTGTGTAT CAAGTACAAT CCATCGATAG CCCACATGGT CGACCCCCAG
GCGGCAGCCG AGTTGCAGCG TCGTTTGCCG GCGCACATGG CTATTGCCGT CTCTTCGGGC
GAAGATGAGT TGGCGGCTAT CGTTGCTCTG CCCGAGGTGG ATTGCGTCAT GGCGGCCATC
GTCGGCGCGG CGGGTCTACC TGCCACACTG GCGGCGGTTA AGGCGGGTAA GCGGGTGCTG
CTGGCCAATA AAGAGTCGCT GGTGATGTCG GGTCGTCTGT TTATCGATGC GATGCAGGGC
TCAAACGCCA AGGTGTTGCC AGTAGACAGT GAGCACAACG CCATCTTCCA GTGTCTGCCA
GAGCCTGCTC AGCAAGCCAT TGGCGCCTGC GATCTGGCCG GTGCCGGCAT CTCCCATATT
TTGTTGACCG GATCGGGCGG ACCTTTTCTC ACCTCAGATC TCGATAGTCT GAGTCAGATG
ACGCCGGACC AGGCCTGCAA ACATCCTAAC TGGTCCATGG GGCGTAAGAT CTCGGTCGAT
TCCGCCAGTA TGATGAACAA GGGACTCGAG TATATCGAGG CCCGTTGGCT GTTTAATGCC
ACCAAAGAGC AACTCAAGGT CGTAGTGCAT CCCCAGAGCG TGATCCACTC TATGGTGCAG
TATAAGGACG GCAGCGTGTT GGCCCAGATG GGCAATCCAG ACATGCGCAC GCCCATAGCG
CACTGCATGG CCTATCCGCA AAGAATTTCG GCGGGCGTTG AACCTTTAGA TTTTTTCAAA
GTCGGACAGT TAAGCTTTCT TGAACCCGAC TTCAATCGCT TCCCCTGTCT GAAGTTGGCC
ATAGATGCCT GCGAGCAGGG ACAGGAAGCC ACCACGGTAT TGAACGCGGC CAACGAGGTG
TCGGTCGAGG CCTTCCTGGC AGGATTGATA CGTTTTACCG ATATCGCACG GGTAAACGAG
TATTGCCTGA GTCATGTCGA GCAGCGTAGC TTAGACACCA TAGAAGATAT TTTGGCGCTG
GATGGCCTGG CACGGCGTGC GGCGCAGGAG CGGGTCGCCA AACTATAA
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| Protein sequence | MQKMVILGAT GSIGASTLSV IEQNPEAYKA FALVAHKSVD KMLDLCIKYN PSIAHMVDPQ
AAAELQRRLP AHMAIAVSSG EDELAAIVAL PEVDCVMAAI VGAAGLPATL AAVKAGKRVL
LANKESLVMS GRLFIDAMQG SNAKVLPVDS EHNAIFQCLP EPAQQAIGAC DLAGAGISHI
LLTGSGGPFL TSDLDSLSQM TPDQACKHPN WSMGRKISVD SASMMNKGLE YIEARWLFNA
TKEQLKVVVH PQSVIHSMVQ YKDGSVLAQM GNPDMRTPIA HCMAYPQRIS AGVEPLDFFK
VGQLSFLEPD FNRFPCLKLA IDACEQGQEA TTVLNAANEV SVEAFLAGLI RFTDIARVNE
YCLSHVEQRS LDTIEDILAL DGLARRAAQE RVAKL
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