Gene Shew_2628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2628 
Symbol 
ID4923890 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3102857 
End bp3104218 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content53% 
IMG OID640164222 
Productputative membrane-associated zinc metalloprotease 
Protein accessionYP_001094753 
Protein GI127513556 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0750] Predicted membrane-associated Zn-dependent proteases 1 
TIGRFAM ID[TIGR00054] RIP metalloprotease RseP 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000538528 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.548541 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAGACT TTTTGTGGAA CTTGGGCTCA TTCATTATCG CCCTTGGAAT TCTCATCACA 
GCCCATGAAT ATGGTCACTT CTGGGTGGCC AGACGTTGCG GCGTGAAAGT TGAGCGTTTC
TCTATCGGTT TCGGTAAGGC CATCTGGCGC AAGATCGGCG CCGATGGTAC CGAGTACGTG
GTGGCCATGA TCCCCCTCGG CGGCTATGTG AAGATGCTCG ACGAGCGGGT CGATACCGTA
GCCGATGAGC TAAAGCCCCA GGCCTTTAAC CGTAAATCTG TCTGGCAGCG CATCGCCATC
GTCGGTGCCG GCCCCATGGC CAACTTCGTG TTTGCCATCT TTGCCCTCTA CATCATGTAC
CTTATCGGCG TGCCCTCGAT TAAACCTGTG ATCGAATCGA CACAGTCCGG CTCGCCGGCG
GCTGTGATTC AGGTCAAGAA GCCGATGCAG GTGATTGCCG TTGGCGATCG CAGCGTACGC
AACTGGGAAG AGGTGACCTA CGCCTTGGTC GGTCACATAG GTGATGATGC CATCGACGTC
ACGCTGGCCC CCTTATCGGG CGTGATGGGC GAGGAGCGCA CCTATAAGTT AGATACCCGC
AAGTGGAAGT TTAATCCTGA GACTGAGTCG CCCATTACTT CGCTGGGCCT CAATGTCTTT
AGGCCTGCCA TCACCCCTAA GTTGGGTTTT GTGGCCGAAG ATGGCGCCGC CTACGCGGCT
GGTTTGCGCC TAGGTGACAC CTTAGTCGCC GTCGATAACA AATCTTATGG CGATTGGGAT
CAGTTTGTTG CCAAGATCAA GGCATCGGCG GATAAGCCAA TTAGCGTGAC CATCAGACGC
GACGGTGAGC AGCTTAAGTT TAATGTCACC CCTAAAGCGC GCACTATTGA CGGCGGTAAG
GTCGAGGGCG TGATTGGCGT GGCACCGACC CAGGCGCCTT GGCCTGATGA GATGCGTCTG
CAACTGGAAT ACGGTGTCGG TGAGTCCCTC ATGGTCGCCG CCGATAAAAC ATGGCAACTT
GTATCGGTCA GCATTAAGAT GATCGGCAAA CTCTTTACCG GTGACGTGTC GGTGAAGAAT
TTGAGCGGCC CTATCTCTAT CGCTCAGGGC GCGGGAAACA GCGCCAACTA TGGTTTAGTT
TACTTTTTGG GATTCCTGGC ATTAATCAGC GTGAATTTAG GCATTATTAA TTTATTGCCT
TTACCCGTGC TTGATGGCGG GCATCTGTTA TATTACTTCA TCGAAGTGAT CACAGGCAGG
CCTGTACCGG AAAAGGTGCA GGAAATTGGA TTCAGATTTG GGGCAGCCTT GCTGCTAATA
TTGATGAGTA TCGCCCTTTT CAATGATTTT TCCCGACTCT GA
 
Protein sequence
MLDFLWNLGS FIIALGILIT AHEYGHFWVA RRCGVKVERF SIGFGKAIWR KIGADGTEYV 
VAMIPLGGYV KMLDERVDTV ADELKPQAFN RKSVWQRIAI VGAGPMANFV FAIFALYIMY
LIGVPSIKPV IESTQSGSPA AVIQVKKPMQ VIAVGDRSVR NWEEVTYALV GHIGDDAIDV
TLAPLSGVMG EERTYKLDTR KWKFNPETES PITSLGLNVF RPAITPKLGF VAEDGAAYAA
GLRLGDTLVA VDNKSYGDWD QFVAKIKASA DKPISVTIRR DGEQLKFNVT PKARTIDGGK
VEGVIGVAPT QAPWPDEMRL QLEYGVGESL MVAADKTWQL VSVSIKMIGK LFTGDVSVKN
LSGPISIAQG AGNSANYGLV YFLGFLALIS VNLGIINLLP LPVLDGGHLL YYFIEVITGR
PVPEKVQEIG FRFGAALLLI LMSIALFNDF SRL