| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2628 |
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| Symbol | |
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| ID | 4923890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3102857 |
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| End bp | 3104218 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164222 |
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| Product | putative membrane-associated zinc metalloprotease |
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| Protein accession | YP_001094753 |
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| Protein GI | 127513556 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000538528 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.548541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAGACT TTTTGTGGAA CTTGGGCTCA TTCATTATCG CCCTTGGAAT TCTCATCACA
GCCCATGAAT ATGGTCACTT CTGGGTGGCC AGACGTTGCG GCGTGAAAGT TGAGCGTTTC
TCTATCGGTT TCGGTAAGGC CATCTGGCGC AAGATCGGCG CCGATGGTAC CGAGTACGTG
GTGGCCATGA TCCCCCTCGG CGGCTATGTG AAGATGCTCG ACGAGCGGGT CGATACCGTA
GCCGATGAGC TAAAGCCCCA GGCCTTTAAC CGTAAATCTG TCTGGCAGCG CATCGCCATC
GTCGGTGCCG GCCCCATGGC CAACTTCGTG TTTGCCATCT TTGCCCTCTA CATCATGTAC
CTTATCGGCG TGCCCTCGAT TAAACCTGTG ATCGAATCGA CACAGTCCGG CTCGCCGGCG
GCTGTGATTC AGGTCAAGAA GCCGATGCAG GTGATTGCCG TTGGCGATCG CAGCGTACGC
AACTGGGAAG AGGTGACCTA CGCCTTGGTC GGTCACATAG GTGATGATGC CATCGACGTC
ACGCTGGCCC CCTTATCGGG CGTGATGGGC GAGGAGCGCA CCTATAAGTT AGATACCCGC
AAGTGGAAGT TTAATCCTGA GACTGAGTCG CCCATTACTT CGCTGGGCCT CAATGTCTTT
AGGCCTGCCA TCACCCCTAA GTTGGGTTTT GTGGCCGAAG ATGGCGCCGC CTACGCGGCT
GGTTTGCGCC TAGGTGACAC CTTAGTCGCC GTCGATAACA AATCTTATGG CGATTGGGAT
CAGTTTGTTG CCAAGATCAA GGCATCGGCG GATAAGCCAA TTAGCGTGAC CATCAGACGC
GACGGTGAGC AGCTTAAGTT TAATGTCACC CCTAAAGCGC GCACTATTGA CGGCGGTAAG
GTCGAGGGCG TGATTGGCGT GGCACCGACC CAGGCGCCTT GGCCTGATGA GATGCGTCTG
CAACTGGAAT ACGGTGTCGG TGAGTCCCTC ATGGTCGCCG CCGATAAAAC ATGGCAACTT
GTATCGGTCA GCATTAAGAT GATCGGCAAA CTCTTTACCG GTGACGTGTC GGTGAAGAAT
TTGAGCGGCC CTATCTCTAT CGCTCAGGGC GCGGGAAACA GCGCCAACTA TGGTTTAGTT
TACTTTTTGG GATTCCTGGC ATTAATCAGC GTGAATTTAG GCATTATTAA TTTATTGCCT
TTACCCGTGC TTGATGGCGG GCATCTGTTA TATTACTTCA TCGAAGTGAT CACAGGCAGG
CCTGTACCGG AAAAGGTGCA GGAAATTGGA TTCAGATTTG GGGCAGCCTT GCTGCTAATA
TTGATGAGTA TCGCCCTTTT CAATGATTTT TCCCGACTCT GA
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| Protein sequence | MLDFLWNLGS FIIALGILIT AHEYGHFWVA RRCGVKVERF SIGFGKAIWR KIGADGTEYV
VAMIPLGGYV KMLDERVDTV ADELKPQAFN RKSVWQRIAI VGAGPMANFV FAIFALYIMY
LIGVPSIKPV IESTQSGSPA AVIQVKKPMQ VIAVGDRSVR NWEEVTYALV GHIGDDAIDV
TLAPLSGVMG EERTYKLDTR KWKFNPETES PITSLGLNVF RPAITPKLGF VAEDGAAYAA
GLRLGDTLVA VDNKSYGDWD QFVAKIKASA DKPISVTIRR DGEQLKFNVT PKARTIDGGK
VEGVIGVAPT QAPWPDEMRL QLEYGVGESL MVAADKTWQL VSVSIKMIGK LFTGDVSVKN
LSGPISIAQG AGNSANYGLV YFLGFLALIS VNLGIINLLP LPVLDGGHLL YYFIEVITGR
PVPEKVQEIG FRFGAALLLI LMSIALFNDF SRL
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