| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2627 |
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| Symbol | |
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| ID | 4923889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3100342 |
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| End bp | 3102825 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164221 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_001094752 |
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| Protein GI | 127513555 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0218715 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.613387 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATTGA ATAAAATTTT TGCCTCGATG TTATTAGTCG GTGCGTCTTT ATCAGGGAAG
GGTTGGGCCG ATACATTCCA GCCTTTTGAA GTGACCGACA TCCAGGTTAA GGGACTGCAG
CGTGTTGCAC TGGGTGCGGC GCTGTTGAAT ATTCCTATCA AGGTGGGAGA CACGGTCGAC
GAGATGCGTC TGCAGCAGGC GATTAAGAGC CTGTATTCCT CGACTAACTT CGAGCATATC
GAGGTGAGCC GCGATGGCAG CGTCTTGGTA GTAACGGTCA AAGAAAGGCC TACCATCAGC
GTCGTGACCT TTGAAGGCAA CAAGGACATT AAAGACGAGC AGCTGCAAGA GAGTCTCGAC
GGCAGTGGCG TCAAGGCCGG TGAGTCGCTG GATCGCACCA TGCTCAGCGG CATCGAGAAG
AGCCTGCAGG ACTTCTACTA TGGCGTGGGT AAATATGGCG CCAAGGTTGA GGCTCAGGTG
ATTAACCTGC CGCGTAACCG TGTCGAGTTG AAATTTAAGT TTACCGAAGG TTTGGCGGCA
GAGATTCGTC AGATCAACGT GGTGGGCAAC ACTGTCTTTA GCGACGCCGA ACTGATCGGC
ATGCTGGAGC TGAAAGACTA TGTGGCATGG TGGGATCTCT TCGGTGAGCG CCGCTATCAG
AAGCAGAAGC TGCAGGCCGA CCTTGAAACC ATCAAGACCT TCTACCACAA CCGCGGTTAT
ATCCGTTTCG AGGTGACCTC GACTCAGGTG GCGATGACCC CTGACCGTAA GGGTCTCTAC
ATCACCATCA ACGTTGACGA GGGTGAGCAG TACAAGGTTA AAGAAGTTAA CCTGACTGGC
GACCTCATGG GCCGCGAAGA GGTGATGCAG GCGATTCTGC CGATCAAGGT AGGCGATACC
TATAACGGCG CGGATGTGAC CTTTACCGAA GAGATGTATG GCAAGTATCT GGGCCGTTTC
GGATATGCCT ACCCAGAGGT GAAGACCTAT CCTGAGATCG ATGATGAGAC TAAAGAGGTC
GCCCTCAACG TCAACATCAA GCCGGGTAAG CGCGTCTATG TACGTAGCAT TAACTTTACC
GGTAACCAGG TTACCAAAGA TGAGGTGATG CGCCGCGAGC TGCGTCAGAT GGAAGGCGCT
TGGCTGAACT CGGCCCAGGT TGAGCAATCC AAGGCGCGTC TGAACCGCCT GGGTTACTTC
GAAACCGTCG ATACTCAGAC GGTTCAGGTG CCGGGCACAG ATGACCTGGT GGACGTCGAC
TTCACCGTGA AGGAGCAGCC ATCAGGCTCG TTCAACGCGG GGGTGGGTTA TGGTACCGAG
TCGGGCCTGA GCCTACAGTT CGGTGTGCAG CAGAGTAACT TCCTGGGTAC AGGTAATCAG
GCGGGTATCA ACCTTAACAC CAACAAATAC TCGAAGAACG TCAACATCAA CTACACAGAT
CCTTACTTCA CCAAAGATGG CGTGAGCCTG GGTGGTAGCA TCTACTGGAA CGAGTTTGAC
GCTCAGGAAG CGAACCTCGA ACGCTATAAG AACAGTTCTT ACGGTATTGC TGTCAACTCC
GGCTTCCCGA TCAACGAATA CAACCGTATC AACGGTGGTA TCGGCTATCG TCACAACAGC
ATCTCGGAGA TCTCGGCCTA CGAGCAGGCC CTGCGCTTCT ACAACATCTA TCGTGATGCC
AACGATCCTA ACGCCGACCT GTCGTTCGAT AACTTCGAGC TGACCCTCGG CTGGTACCGC
AGCACGCTTA ACCGCGGCAC CTTCCCAACC GATGGTTCGT CACAGCGTCT GAGCGGCAAG
ATGACGGTGC CAGGTTCGGA TCTGCAGTAC TTTAAGACAG ATTTCGATAC CAGCTTCTAC
TGGCCAATCA ACCGCAGCCA CAGCTTCGTG CTCCTGACTA AGGCGCGCCT GGGTTATGGT
AACGGTTATG GTCAGTACAA CGACAACGAC CAGATCCTAC CTTTCTGGGA GAACTACTAC
TCGGGTGGTA GCAGCTCACT GCGTGGCTTC AAGTCTAATT CTGTGGGTCC ACGTTCATTC
TACCTGTATC GTGGTAGTGA GCCGTGCTCG CCAGATCCAG CAGGGGATAC TTGTACCTTG
CCAGGGGATC CTAACCGTGT CACTGTGAGC GGTGGCCGCT CTATCGGTGG TAACGCCATC
GCTACGGCGA GTGTTGAGAT GATAGTGCCA ACTCCATTCC TGGATGAGGC CTACACTAAC
TCGGTGCGTA CCAGCTTCTT CGTCGATGCG GGTAACGTCT GGGATACCGA GTTCGACTAT
GACGCCTATC GCTTCCTGCC GGCTGAGCAG TTCGACAAGT TGTCTGACTA TTCAGACCCA
GGACGTATCC GCGCCTCGGC GGGGATGAGC GTACAATGGT TGTCGCCAAT GGGACCTATG
GTATTTAGTC TTGCATGGCC AATCAAAAAA TATGAAGATG ATGACACAGA GATCTTCTCG
TTCAACATTG GTAAAACTTT CTAA
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| Protein sequence | MRLNKIFASM LLVGASLSGK GWADTFQPFE VTDIQVKGLQ RVALGAALLN IPIKVGDTVD
EMRLQQAIKS LYSSTNFEHI EVSRDGSVLV VTVKERPTIS VVTFEGNKDI KDEQLQESLD
GSGVKAGESL DRTMLSGIEK SLQDFYYGVG KYGAKVEAQV INLPRNRVEL KFKFTEGLAA
EIRQINVVGN TVFSDAELIG MLELKDYVAW WDLFGERRYQ KQKLQADLET IKTFYHNRGY
IRFEVTSTQV AMTPDRKGLY ITINVDEGEQ YKVKEVNLTG DLMGREEVMQ AILPIKVGDT
YNGADVTFTE EMYGKYLGRF GYAYPEVKTY PEIDDETKEV ALNVNIKPGK RVYVRSINFT
GNQVTKDEVM RRELRQMEGA WLNSAQVEQS KARLNRLGYF ETVDTQTVQV PGTDDLVDVD
FTVKEQPSGS FNAGVGYGTE SGLSLQFGVQ QSNFLGTGNQ AGINLNTNKY SKNVNINYTD
PYFTKDGVSL GGSIYWNEFD AQEANLERYK NSSYGIAVNS GFPINEYNRI NGGIGYRHNS
ISEISAYEQA LRFYNIYRDA NDPNADLSFD NFELTLGWYR STLNRGTFPT DGSSQRLSGK
MTVPGSDLQY FKTDFDTSFY WPINRSHSFV LLTKARLGYG NGYGQYNDND QILPFWENYY
SGGSSSLRGF KSNSVGPRSF YLYRGSEPCS PDPAGDTCTL PGDPNRVTVS GGRSIGGNAI
ATASVEMIVP TPFLDEAYTN SVRTSFFVDA GNVWDTEFDY DAYRFLPAEQ FDKLSDYSDP
GRIRASAGMS VQWLSPMGPM VFSLAWPIKK YEDDDTEIFS FNIGKTF
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