Gene Shew_2625 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2625 
SymbollpxD 
ID4923887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand- 
Start bp3098746 
End bp3099771 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content54% 
IMG OID640164219 
ProductUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 
Protein accessionYP_001094750 
Protein GI127513553 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 
TIGRFAM ID[TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 


Plasmid Coverage information

Num covering plasmid clones0 
Plasmid unclonability p-value0.0000000811763 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.945901 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAGTT ATACCCTAAG TGAGATCGCC GCCCATCTGA ATGCCGAGGT CAAGGGTGAC 
GAGACGGTGA CTATTCACCG TGTCGCCACG CTGGAGAAGG CACAGGCGGG GGAGATCTCC 
TTTCTGGCGA ATCCCAAATA CCAGAGTCAG TTAGAAGGCA CGGCAGCCTC TGCCGTGTTG 
CTTTCGCCCA AGATGGCCGA GCATTACAGT GGCAATGCCT TAGTGTTGGC CGACCCCTAT 
GTGGGTTTTG CAAGAGTTGC TCAGCTGCTC GACACCACGC CTAAGGCCGC CGAGGCTATT 
CACCCCAGTG CGGTTATCGA CCCTAGCGCC CAGCTGGGTG AAGGCGTCGC CATAGGGGCC 
AATGCGGTGA TAGGCGCCAA GGTTATCTTA GGCGAGAATG TTCAGGTAGG TCCCGGCTGT 
GTGCTTGGCC AGGATGTTAT CGTCGGCTCA AACTCTATCC TGTGGGCCAA CGTGACCCTT 
TACCATGATG TGCAGCTGGG TACAGACTGT ATCGTGCATT CGGGTACAGT GATCGGCTCT 
GACGGTTTTG GTTATGCCAA TGAGCGTGGT CTATGGATCA AGATCCCACA AACCGGTGGG 
GTGCGTATCG GTAACCGTGT CGAGATAGGT GCCTGCACCA GTATCGACCG CGGCGCGCTG 
GATCACACAG AGATCCACGA TGGAGTTATC ATCGACAACC AGGTGCAGCT TGCACACAAC 
GTGGTAGTGG GTGAAAACAC CGCACTGGCC GGTAGCTCTA CCTTTGCCGG CAGCTGTAAT 
ATAGGTAAAT ACTGTATCAT AGGCGGCAGT AGCGCCGTGG CAGGGCATCT GTCGATTGCC 
GACGGTACCC ATATCTCGGG TGGCACCAAT GTGACGAGTG TTATTCGTGA GCCTGGTGTA 
TACTCTTCTG CTACCGTTGC GATGGAAAAC AAGTTGTGGC GACGTAATAC CGTCAGATTC 
AGACAACTTG ATGAATTGTT CCAACGCGTC AAACAGCTTG AAAAAAACGT TAAATCAGAT 
GATTAA
 
Protein sequence
MTSYTLSEIA AHLNAEVKGD ETVTIHRVAT LEKAQAGEIS FLANPKYQSQ LEGTAASAVL 
LSPKMAEHYS GNALVLADPY VGFARVAQLL DTTPKAAEAI HPSAVIDPSA QLGEGVAIGA 
NAVIGAKVIL GENVQVGPGC VLGQDVIVGS NSILWANVTL YHDVQLGTDC IVHSGTVIGS 
DGFGYANERG LWIKIPQTGG VRIGNRVEIG ACTSIDRGAL DHTEIHDGVI IDNQVQLAHN 
VVVGENTALA GSSTFAGSCN IGKYCIIGGS SAVAGHLSIA DGTHISGGTN VTSVIREPGV 
YSSATVAMEN KLWRRNTVRF RQLDELFQRV KQLEKNVKSD D