| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2620 |
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| Symbol | dnaE |
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| ID | 4920719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3091974 |
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| End bp | 3095447 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164214 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001094745 |
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| Protein GI | 127513548 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGAAC CTCGTTTCGT GCACCTGCGC GTACACAGTG ATTTTTCCAT GTCTGATGGC
CTCGCCAAGG TCAAGCCCAT TCTCGCCAAG GCCAGTGAAG ATCAGATGGC CGCACTGGCC
CTGACCGACA ACACCAACCT CTGCGGCCTG GTGAAGTTTT ATGGCGGTTG TCACGGCGCT
GGGATCAAGC CCATCGTAGG TTGTGACTTC TTCATGCTGG TGCCAGGATT CGAGGATGAG
TTCTGTTCCC TGACCGTGCT GGCGATGAAC AACGAGGGGT ATAAGAACCT CACCCTGCTG
ATCAGTGATG CCTATCTGCG TGGCCATGTA AAAGACAGGG CGGTGATCGA CCAGGCCTGG
CTGGAGCGCT ACAGCGAAGG GCTGATCCTG CTCTCCGGCG CCAAAGATGG CGACGTGGGC
AAGGCGCTGC TCAAGGGTAA CCAGGGCCAG GTGGACTCTC TGGTCGCCTT CTATCAGACC
CATTTCCCCG ACCGTTATTA TCTCGAGCTT ATCCGCACGG GTCGCCCCGA TGAGGAGCGT
TATCTGCATA TGGCGGTCGA GCTGGCAGGC GAGAAAGACC TGCCCGTGGT CGCCACCAAT
CAGGTGGTGT TCATACAGCC TGAGCAATTC GAGGCCCACG AGATCCGCGT GGCCATCTCG
GATGGTTTCA CCCTGGCCGA CCCAAGGCGG CCGCGCCGCT ACAGCGAGCA GCAATATTTC
CGCATTCAGG ATGAGATGTG TGAGCTGTTT GACGATATCC CTGAGGCGTT GCAAAACAGC
GTGGAGATCG CCAAGCGCTG TAACGTTACC GTGAGACTCG GTGAATACTT CCTGCCGAAC
TTCCCCACCG GCGATCTCTC CATCGAAGAT TTTCTGGTCG AGGTCTCCAA GAAGGGCCTG
GAGGAGCGTC TCGAGTTCCT CTTCCCTGAT GAAGCACAGC GCGCCGAGCG CCGCGGCGAG
TATGACGAGC GTCTCGATGT CGAGCTGACG GTAATTAACA ACATGGGATT CCCCGGCTAC
TTCCTCATCG TGATGGAGTT CATTCAGTGG GGTAAAGACA ACGGTATCCC TATCGGTCCC
GGCCGTGGTT CGGGGGCGGG TTCTCTGGTG GCCTATGCCC TTAAGATCAC CGATCTCGAC
CCGCTGGAAT TCGACCTGCT GTTCGAACGT TTCCTTAACC CAGAACGTGT TTCCATGCCC
GATTTCGACG TCGACTTCTG TATGGACAGA CGCGACGAGG TGATCGACCA CGTGGCCGAA
CTCTATGGCC GTGACGCCGT GTCGCAGATC ATCACCTTCG GTACCATGGC GGCTAAGGCC
GTGGTGCGTG ACGTGGGCCG TGTACTGGGT CACCCCTATG GCTTCGTCGA CCGTATCTCT
AAGATGATCC CGGCCGAGCC CGGCATGACA CTGGCCAAGG CGTTCGAGGC CGAGCCGGCA
CTGCCCGAGG CCTATGACGC CGACGAAGAG GTGAAAGATC TCATCGACAT GTGCCGGGTG
CTGGAAGGGG TCACACGTAA CGCGGGTAAA CACGCCGGGG GCGTGGTGAT CGCGCCGACG
GTGATCACTG ACTTTGCGCC GCTCTACTGT GATGCCGAGG GCCACAACCC GGTTACCCAG
TTCGATAAGA ACGACGTAGA GACCGCCGGT CTGGTGAAGT TCGACTTCCT GGGTCTGAGG
ACCCTGACCA TCATCGACTG GGCGTTGCAG ATGATCAATC CGCATCTGGC GAAGCAGGGC
AAAGAGCCGG TGCGTATCGA GGCGATCGTT TTGGATGACC CAGCCTCCTT CCGTCTGCTG
CAGCGTTATG AAACCACCGC CGTGTTCCAG CTGGAATCTC GCGGTATGAA AGATCTGATT
AAGCGCCTAC AGCCTGACTG CTTCGAAGAT ATGATCGCAC TGGTGGCCCT GTTCCGTCCC
GGGCCGCTAC AGTCGGGCAT GGTAGATAAC TTCATCGAGC GTAAGCACGG CCGTGAAGAG
GTTTCTTATC CCGACCAGCA GTGGCAACAC GAGAGCCTTA AGCCGATTCT GGAGCCCACC
TACGGTATCA TTCTCTACCA GGAACAGGTG ATGCAGATCG CCCAGGTACT GGCGGGCTAT
ACCCTGGGCG GCGCGGACAT GCTGCGTCGT GCCATGGGTA AGAAGAAACC CGAAGAGATG
GCCAAGCAGC GTAGTGTCTT CGAAGAGGGC GCGGTGAAGA ACGGCGTCGA CGGCGAGCTG
GCGATGAAGA TCTTCGACTT GGTGGAGAAG TTTGCCGGTT ACGGCTTCAA CAAGTCGCAC
TCGGCCGCCT ACGCCTTGGT GTCCTACCAG ACCCTCTGGC TCAAGACCCA TTTCCCGGCG
CAGTTTATGG CGGCGGTGAT GTCGGCGGAT ATGGACAACA CAGACAAGAT CGTGACCCTG
GTGGACGAGT GTGAGCGCAT GGGCTTACCG CTGTTGCCGC CGGACGTCAA CAAGGGCCTG
TTCCGCTTCA CCGTGGATGA CGACCTCAAC ATCGTCTATG GCATCGGCGC CATCAAGGGC
GTGGGTGAAG GCCCGGTGGA ATCGATTCTG AAGGCGCGCG AGGATGGGCC TTTCATCGAT
CTGTTCGACT TCTGCGCCCG GGTCGATCTC AAGAAGCTTA ATCGCAGAGT TATCGAGAAA
CTGATCTGCG CCGGCGCCTT GGATAACCTG GGGCCGCACC GCGCCGCCAT GATGGCGACC
CTGCCAGAGG CAATTCGCGC CGCGGATCAG CATGCCAAGG CCGAGGCGAT TGGCCAGCAC
GACATGTTTG GCCTGCTCAA CAGCGAGCCG GAAGACAACA AGCAGCAGTT TGTGCACTGC
ACGCCCTGGC CCGATAAGGT GTGGCTCGAG GGCGAACGGG ATACCTTAGG TCTGTACCTC
ACCGGTCACC CGATTAATCA GTATCTCAAG GAACTGAAGC ACTACACTTC GGGCAGGCTC
AAGGATGTGC ATCCCACCGA GCGGGGCAAG ACCACCAAGG CTGCCGGGCT CGTGGTGGCG
ACCCGTGTGA TGATGACCAA GCGCGGCTCC AAGATGGGCC TGGTCACCCT GGACGATAAG
AGTGCCCGTT TGGAGGTGAT GCTGTTTACC GAGGCCTTTG AGAAATTTGG TGAGCTGCTG
GAGAAAGACA GGATCTTGAT CGTCGAAGGG GAGGTGAGTT TCGATGACTT CTCCGGCGGC
AATCGCATGA CGGCCCGCAG CATCATCGAT ATGGGTGAGG CGCGCAGCCA CTTCGCCCAC
GCGGTCGAGG TGGATCTGGA CGGCGCTAGC ATCACCCCAG AGTGGCTTGG CCAGTTCCAA
CAAGCGGTCG AGCCCTGGAA GGCGGGCAGT GTACCCTTGG TGATCAACTA TGCCCAGCCT
ACCGCTAAGG CCCAGTTCAG GCTGGGGGAT GAGTGGCGGG TGAATCCGAC CGACGAGCTG
ATGCTGGCAC TGGAGACGCT GACCGGGTCT GACAAGGTAA GGATCCTCTT CTAG
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| Protein sequence | MSEPRFVHLR VHSDFSMSDG LAKVKPILAK ASEDQMAALA LTDNTNLCGL VKFYGGCHGA
GIKPIVGCDF FMLVPGFEDE FCSLTVLAMN NEGYKNLTLL ISDAYLRGHV KDRAVIDQAW
LERYSEGLIL LSGAKDGDVG KALLKGNQGQ VDSLVAFYQT HFPDRYYLEL IRTGRPDEER
YLHMAVELAG EKDLPVVATN QVVFIQPEQF EAHEIRVAIS DGFTLADPRR PRRYSEQQYF
RIQDEMCELF DDIPEALQNS VEIAKRCNVT VRLGEYFLPN FPTGDLSIED FLVEVSKKGL
EERLEFLFPD EAQRAERRGE YDERLDVELT VINNMGFPGY FLIVMEFIQW GKDNGIPIGP
GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE
LYGRDAVSQI ITFGTMAAKA VVRDVGRVLG HPYGFVDRIS KMIPAEPGMT LAKAFEAEPA
LPEAYDADEE VKDLIDMCRV LEGVTRNAGK HAGGVVIAPT VITDFAPLYC DAEGHNPVTQ
FDKNDVETAG LVKFDFLGLR TLTIIDWALQ MINPHLAKQG KEPVRIEAIV LDDPASFRLL
QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREE
VSYPDQQWQH ESLKPILEPT YGIILYQEQV MQIAQVLAGY TLGGADMLRR AMGKKKPEEM
AKQRSVFEEG AVKNGVDGEL AMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHFPA
QFMAAVMSAD MDNTDKIVTL VDECERMGLP LLPPDVNKGL FRFTVDDDLN IVYGIGAIKG
VGEGPVESIL KAREDGPFID LFDFCARVDL KKLNRRVIEK LICAGALDNL GPHRAAMMAT
LPEAIRAADQ HAKAEAIGQH DMFGLLNSEP EDNKQQFVHC TPWPDKVWLE GERDTLGLYL
TGHPINQYLK ELKHYTSGRL KDVHPTERGK TTKAAGLVVA TRVMMTKRGS KMGLVTLDDK
SARLEVMLFT EAFEKFGELL EKDRILIVEG EVSFDDFSGG NRMTARSIID MGEARSHFAH
AVEVDLDGAS ITPEWLGQFQ QAVEPWKAGS VPLVINYAQP TAKAQFRLGD EWRVNPTDEL
MLALETLTGS DKVRILF
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