| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2618 |
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| Symbol | |
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| ID | 4920717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3089489 |
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| End bp | 3090376 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164212 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001094743 |
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| Protein GI | 127513546 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTTTG CCTTAGCGAC AGAATTTTCG TTTGACGAAT ATCGCTATCA GCCAGATCAC
CATCACAATA CAGTCGGTGC GCCAAACGGT GCGCCTAATC TAGTCACCGT CATGCAGCAG
CTACATGAGA GCCTAGATCC ACGGACGGTA TTTGCCTGCT ACGGCAAACT CATGGGACAA
CACTTGCCAG TGCTGGGGAT CACCCTGTGC TATAAAGAGT ATCAGCTAAG CTGGGGCGGT
GAGCAAGGTT TACTAATAAA ACAAAACCTT AGCCATGATG GGGTGAGCAT CAGCATCGCC
TATCGTCTGT CGGCGCCGCT GATCAAGCCA CAGACAGAGC TGCTATATCA GTTGCAGTCA
CTGCTGCTGA GTCCCTTGGT AAACGCCATC GCCTACCAGC AGATGGCGAA ACAGGCGATG
CACGACTCAC TCACCCATCT GGGCAACCGC CGCTACTATG AGCAGAGCCT CAAGCAGGTT
CTGGCCCGCG CTCAACGCCA TGGGGATGCG ATCACCTTAG TGGTGCTGGA TCTCGATAAC
TTCAAGAGCC TGAATGACAA GTATGGCCAC CTGGTGGGCG ATGAGGTGCT GAGTCAATTC
GGCCACACAC TTGAGCAGGC GATTCGCGAC AGCGATCAGG CCTTCCGCAT AGGCGGTGAT
GAGTTTACCC TGCTGATCGA AGGCGATACC CAGGCGGCCA GCGTGCTGTG TGAGCGGATC
CTCGCCATGA TGGAAGGCGA TAGCCTGCTA ACCAAGTTTC AGGTGCAGAC CAGCATGGGC
CTTGCCCAGT GGCAGCTTGG CAATGACGCC GAGACCCTGT ACCTCAGGGC AGACAAGGCT
CTCTACCGCG CCAAGGCGGC CGGACGTCGC TGCTACCGCG TCGATTAG
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| Protein sequence | MDFALATEFS FDEYRYQPDH HHNTVGAPNG APNLVTVMQQ LHESLDPRTV FACYGKLMGQ
HLPVLGITLC YKEYQLSWGG EQGLLIKQNL SHDGVSISIA YRLSAPLIKP QTELLYQLQS
LLLSPLVNAI AYQQMAKQAM HDSLTHLGNR RYYEQSLKQV LARAQRHGDA ITLVVLDLDN
FKSLNDKYGH LVGDEVLSQF GHTLEQAIRD SDQAFRIGGD EFTLLIEGDT QAASVLCERI
LAMMEGDSLL TKFQVQTSMG LAQWQLGNDA ETLYLRADKA LYRAKAAGRR CYRVD
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