| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2596 |
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| Symbol | |
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| ID | 4920728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3062187 |
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| End bp | 3063896 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164190 |
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| Product | prolyl-tRNA synthetase |
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| Protein accession | YP_001094721 |
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| Protein GI | 127513524 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0442] Prolyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.607572 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAGTTA GCAAGTACCT GCTTTCAACA CAAAAAGAGA CCCCAGCAAA CGCTGAGGTG
GTCAGTCATC AATTAATGCT GCGCGCCGGC ATGATACGTC GTAACGCTTC TGGCCTATAC
AGCTGGTTGC CGTCAGGCTT ACGTGTGCTG CGCAAAGTCG AAGCGATCGT TCGCGAAGAG
ATGAACAATG CAGGTGCTGT AGAGATCTTG ATGCCCATGG TGCAACCGGC GGATCTTTGG
GTTGAAACCG GCCGTTGGGA CAAATTTGGC CCTGAGCTGC TGCGTTTCCA AGACAGACAC
AACCGCGACT TCGTACTGGG CCCAACCCAC GAAGAGGTGA TCACCGACAT CATTCGTAAA
GAGGTTAGCT CTTACAAGCA GCTACCGCTG AACCTGTATC AGATCCAGAC CAAGTTCCGT
GACGAGGTGC GTCCCCGTTT CGGCGTGATG CGTTCACGCG AGTTCCTGAT GAAAGATGCC
TACTCTTTCC ATCTTGATCA GGAAACCATG GATGATACCT ATCAGGCCAT GTACACCGCT
TACAGCAACA TCTTAGGCCG TATGGGTCTG GCCTTCCGTC CGGTATTGGC CGACACAGGT
TCTATCGGTG GCAGCATGTC ACACGAATTC CACGTGCTGG CCAACAGCGG TGAAGACCTG
ATCGCCTACT CGACCGAGAG CGACTACGCC GCCAACATCG AGAAGGCCGA GGCGCCAATG
CCTACCGAGC CTCGTGGCGC CGCCACCATG GAAATGAGCG TTATCGACAC GCCAAACGCC
AAGACCATCG AAGAGTTGGT TGAGCAGCAC GGTATCGCCA TCGAGAAGAC CATCAAGACC
ATTATCGTTA AGGGCGCCAG CGAAGAGGCA CCTCTGGTAG CCGTTATCGT TCGTGGCGAC
CATGAGCTGA ACGAAGTCAA AGTCGAGAAG CTCGATGCCG TACTGGCACC GTTTGAGATG
GCCGGTGAAG CCGAGATCCG CGACGCACTG GGTGCTGGCC CAGGCTCACT CGGCCCAGTT
GGCATGACCA TCCCTGTGTA TGTGGATCAC AGCGTCAACG TCATGAGCGA CTTTGCCGCC
GGTGCCAACC AAGACGGTAA GCACTATGTG GGCATCAACT GGGAACGCGA CCTGCCACAG
GCAGAGGTTG CCGACCTGCG TAACGTTATC GAAGGTGAAC CTAGCCCATG TGGCAAGGGC
ACCATCGGCC TGCTACGCGG CATCGAAGTG GGTCACATCT TCCAGCTGGG CACCAACTAC
TCGAAAGCCA TGGGCGCCAG CGTACTGGAC GAGAACGGCA AGGCACAGAC ACTGCTGATG
GGTTGTTACG GTGTTGGCGT GAGCCGTATC GTGGCCGCTG CCATCGAGCA GAACCACGAC
GATCGTGGCA TCATCTGGCC AGCTGCCATC GCACCGTTCA AGGTCGGTAT CCTGCCGATG
AACATGCACA AGTCACATCG CATCAAAGAT ATGGCCGAGA AGCTCTACAG CGATCTTAGT
GATGCCGGCA TCGAAGTGCT ATTCGACGAC CGTAAAGAGC GTCCAGGCGT GATGTTTGCC
GACATGGAGC TGATTGGTCT GCCGCACGTC ATCGTGATTG GCGAGCGCAA CATAGACAAC
GGCGTATTCG AATACAAGAA CCGTCGTACC GGCGAGAAGC AAGAGATCCC ATTCGAGGAG
ATCGTCGACT TCATCAAGTC TGCTAAGTAA
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| Protein sequence | MRVSKYLLST QKETPANAEV VSHQLMLRAG MIRRNASGLY SWLPSGLRVL RKVEAIVREE
MNNAGAVEIL MPMVQPADLW VETGRWDKFG PELLRFQDRH NRDFVLGPTH EEVITDIIRK
EVSSYKQLPL NLYQIQTKFR DEVRPRFGVM RSREFLMKDA YSFHLDQETM DDTYQAMYTA
YSNILGRMGL AFRPVLADTG SIGGSMSHEF HVLANSGEDL IAYSTESDYA ANIEKAEAPM
PTEPRGAATM EMSVIDTPNA KTIEELVEQH GIAIEKTIKT IIVKGASEEA PLVAVIVRGD
HELNEVKVEK LDAVLAPFEM AGEAEIRDAL GAGPGSLGPV GMTIPVYVDH SVNVMSDFAA
GANQDGKHYV GINWERDLPQ AEVADLRNVI EGEPSPCGKG TIGLLRGIEV GHIFQLGTNY
SKAMGASVLD ENGKAQTLLM GCYGVGVSRI VAAAIEQNHD DRGIIWPAAI APFKVGILPM
NMHKSHRIKD MAEKLYSDLS DAGIEVLFDD RKERPGVMFA DMELIGLPHV IVIGERNIDN
GVFEYKNRRT GEKQEIPFEE IVDFIKSAK
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