Gene Shew_2582 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2582 
Symbol 
ID4920888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3045587 
End bp3047152 
Gene Length1566 bp 
Protein Length521 aa 
Translation table11 
GC content58% 
IMG OID640164176 
ProductNa+/H+ antiporter NhaC 
Protein accessionYP_001094707 
Protein GI127513510 
COG category[C] Energy production and conversion 
COG ID[COG1757] Na+/H+ antiporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAACTT TGAGTTATGC CGATTCGGCA CTTTCTTTGC TGCCGCCCGT GGTAGCGATT 
CTGCTGGCGA TCTTTACCCG CCGCGTTCTG CTCTCACTCG GTGTGGGGAT CCTCCTGGGG
GCACTGTTAA TTGCCGACTT TTCACCGCTG GATATGGGTC AATACCTGGG ACAGCAGGTG
GTGGGCCTGT TTTGGGATGA TGGCGCCCTA AACAGCTGGA ACGTTTATCT GCTGGGCTTC
TTGATTCTGC TTGGGATGAT CACCGCCCTG ATCACCGTCA GCGGCGCCGC CAAGGCCTTT
GCCGATTGGG CGCGCCAGCA TATTCGCAAC AAGCGTGATG CTAAGCTGCT CACCATGTTC
CTAGGCTGCG TGGTCTTTAT CGATGATTAC TTCAATAGCC TGGTGGTGGG CAGTGTCGCC
AGACCCCTCA CCGACAGATA CTATATCTCG CGCAGCAAAC TGGCTTATTT GCTGGACTCA
ACCGCCGCGC CTATCTGTGT GATCTCGCCC GTCTCTAGCT GGGGTGCCTA CATCATCGCG
CTGATCGGCG GCATACTCAC CGCCCACGGC TTCACCGACA GCGGTCATCT GAGCGTGTTT
ATTCAGATGA TCCCGATGAA CTTCTACGCC ATCTTCGCCC TGGTGCTGCT GCTATGCGTC
GCCTTCATGG GGCTGGATGT GGGGCCCATG CGCCAGCATG AACTCAACGC GCAGAAGGGT
AACCTGTATG ACGAGGCCAA GGGCCTGCCG CCAGGAGCTA ACAGCGACCT GCCCGAGGCC
GATTCCGGCA AGATCTTAGG CCTGTTCCTG CCGATCACTG TGCTGGTGTT TGCCACCATC
TACTTCATGA TAGGTAGCGG CGCCGATGCT CTGGCGGCGG AGAACCTGCC CTTTAGCGTC
ATTGGTGCCT TCGAGAAGAC AGACGTTGCC TCATCGCTCT TCTTCGGCGC CGTGGTTGGC
CTGGCCGCGA CCTTGGTATT GGTGGTCAGT CAGGGGCTGG ATAAGGCGCT TATCTTCAAA
GGCGTGATTG CCGGTGCCCG CTCTATGCTG CCCGCCATCT ATATTCTGCT GTTCGCCTGG
ACCATCGCCG GCGTGATAGG TCAGATGGAG ACGGGTAAAT ATATGGCCAG CCTGGCGACC
GGTAATATTC CCTTCGCGCT GCTGCCGGCC GTACTGTTCG TGCTGGCGGG TCTGACTGCC
TTCTCTACCG GCACCAGCTG GGGCACTTTC GGCATCATGC TGCCTATCGC CGCCGATATG
GCCATGGGCA CCCATACCAA CATGATGTTG CCTATGCTGG CCTCTGTGCT GGCGGGCGCC
GTGTTTGGCG ATCACTGCTC GCCTATCTCG GACACCACCA TCTTGTCTTC TACCGGCGCC
AACTGTCACC ACATAGACCA TGTGCTGACT CAGCTGCCCT ATGCCCTTAT CGTGGCGGGG
ATCAGCCTGG TGGGTTATAC CGTGCTGGGC TTCACCGAAT CCGTGGGTGC CGGTCTGGCG
GCTTGTAGTG CGCTGTTTGT GGTGAGCGTT TTGGTGCTGC GCCATAAGGC CAATCGCCCG
GCTTAA
 
Protein sequence
MTTLSYADSA LSLLPPVVAI LLAIFTRRVL LSLGVGILLG ALLIADFSPL DMGQYLGQQV 
VGLFWDDGAL NSWNVYLLGF LILLGMITAL ITVSGAAKAF ADWARQHIRN KRDAKLLTMF
LGCVVFIDDY FNSLVVGSVA RPLTDRYYIS RSKLAYLLDS TAAPICVISP VSSWGAYIIA
LIGGILTAHG FTDSGHLSVF IQMIPMNFYA IFALVLLLCV AFMGLDVGPM RQHELNAQKG
NLYDEAKGLP PGANSDLPEA DSGKILGLFL PITVLVFATI YFMIGSGADA LAAENLPFSV
IGAFEKTDVA SSLFFGAVVG LAATLVLVVS QGLDKALIFK GVIAGARSML PAIYILLFAW
TIAGVIGQME TGKYMASLAT GNIPFALLPA VLFVLAGLTA FSTGTSWGTF GIMLPIAADM
AMGTHTNMML PMLASVLAGA VFGDHCSPIS DTTILSSTGA NCHHIDHVLT QLPYALIVAG
ISLVGYTVLG FTESVGAGLA ACSALFVVSV LVLRHKANRP A